Gene detail

Gene detail information of Glyur000670s00020731.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58620.1	1.00E-157	zinc finger (CCCH-type) family protein
NR	XP_003539330.1	0	PREDICTED: zinc finger CCCH domain-containing protein 66-like [Glycine max]
Swissprot	tr\|Q9LUZ4\|C3H66_ARATH	0	Zinc finger CCCH domain-containing protein 66
trEMBL	tr\|I1LLK7\|I1LLK7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G27130.1}

Sequence

Transcript Sequence

>Glyur000670s00020731.1
ATGGAAGAGGAGCTGCTGGAGGNATCAGGAGGAGGAAGATCAACTGTGATAGCTAAAGCCATGTGCAGCGGTCCCAAGAGAAAACCCTCTCAAGCTTGTTTGATTATGGGAGATGGATATGGAAGACAAGAAGCTNTGCATCATAAGATTTCTGCTTTGCTCGAGTTTTCAGCCAAAGATGATGTAATGGCTTTCAAAGATGCTGTCGAAAAAGGTGGCCATGATGTTGATGAGGTTGGGTTGTGGTATGGAAGGAGGGTTGGTTCAAAGGAAATGGGGTATGAAGAGAGGACCCCTCTTATGATTGCTGCCATGTTTGGGAGCAAGGGTGTATTATCTTACATTCTCCAAACGGGTCGTGTTGATGTTAACCAGGCATGTGGCTCAGATGGGGCTACTGCCCTTCATTGTACTGTTGCTGGGGGTTCTGCTGCTTCCCTTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAGTGCTGTTGATGCCAACGGTAACCGGTCCAGTGACTTGATTGTCCCGGTGTCTAATGGTATCTTCAGTCCAAGGAAGAGGATACTACAAGCCATACTAGAAGGTGCAGATGATGTTGATGTGGCTTTCCTTGGGGAAGCAGTTGACCAAATGGGGAGACAGCAACAGCAAGATGTAGATTCACCTCAAGTTTCGAAAGATGGGACTGAGAAGAAAGAGTATCCTGTTGATCTCTCTCTTCCGGACATAAACAATGGGATATATAGTACAGATGAGTTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCGGGGGAAAACGCAAGGCGCCGTGATCCAAGGAAATACCATTACAGCTGTGTCCCTTGCCCTGAGTTCCGGAAGGGATCCTGCAGTAAGGGGGATGCTTGTGAATATGCACATGGTATTTTCGAGTGCTGGCTTCATCCNGCCCAATATAGAACCCGGATTTGCAAGGATGAGACTAGATGCACCAGAAGAGTTTGCTTCTTTGCTCACAGGCGAGAGGAGCTTCGCCCCTTGTATGCTTCTACGGGTTCTGCTTTGCCTTCACCCGGATCATATTCAACTGGTGCTTCTTCAATGGACCCTTTCACCCTGGGTTCTCAATCTGCCTTGACACCACATTCCTCAACACCACCTTTGACTCCAACTGGAGCATGTTCTCCTGTGAGTGGAAATACCATGTGGCAAAATCACACTTGTGCTGCAGTCCCTGCCCTTCAGCTGTCCAGAAGCAGATTGAAAACCGCATTGAATGCTAGAGATGCTGATTTAGACATTGAATTGCCTGGACTTGAAAATCGCCAGTNTATGCAGCAACTGTTGCTAGAAGAGATGGTTGGTCTTTCATCCCCTTCCAAATGGAAAAATTCCATGCCCAACAGTCCATCTTTTCCTGGTTCTTTGGGTGATCATCATATTGGGGAGTTAAACAGGCTTGGAGGAGTGAAGCCTACTAACCTTGAAGACTTTTTTGGGTCTCAGATACAATCTCCAATCGGCATCCAGGTGCATCAGAATGTGAACCTGCAACCACGGGGCTATCCTTCCAACCTTTCCGCTTCAAATGTGATCGGATCACCAACATTCAGGGCCGATCCATCTGGGGCAGCAGCCACAGTGGCAATGAATCCAAGATATGCCGCATTTTCAAAGAGGAGCCAGAGCTTTATTGAGCGTGGTGTGGCGAGCCGTAATTCCGAGCTTCCTTCGCGTGCTACCCCAGTTGCTGTGGAGGCTTCTAACTTCTCTTGTTGGGGCTCCCCTGATGGCAAATTAGACTGGGCCATCCGTGGAGACGAGCTGAATAGGCTGAGGAAATCTTCTTCTTTTGGATTTCGAAACAGCAGCAGTCCTTTAACAATGGCAGTGCCACCAAATGATGAGGAACCAGATGTATCCTGGGTTCATTCACTTGTGAAGGATGCTCCAACAGCAGAATCTGGTCAATATCGCGTTGAAGAGCAGCTGCAATGCCATAATGGAACAGATGTGGTTTCAGCTATGCTGGAGCAATTGCACATGGAGCAGGAGCAGATGGTGGCGTGAACCTAATGTTAACTCTGCCATTGGATCCTCTATGAAACTCTATACTAGTTTATTTATTTAATGATTATTATTATTTTTTAATTTTATAGATATTCATTGTATTTGGGGTGACATTTTATGGAATTTATGGTAAAATGTCTCCCAAGGTAACAATATAGAAGTTGGGCAGAATGCAAGTTTTCTGCTCCNGTAACTACTTGTTACTGCTACTGGTATTAGGGTATTTGATTCCATTTTCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00670	3531	6657	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000670s00020731.1	PF12796.2	Ank_2	65	163	3.70E-09
Glyur000670s00020731.1	PF00642.19	zf-CCCH	297	317	8.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.443
SRR1783600	control	10.462
SRR1783602	moderate drought stress	7.839
SRR1811619	moderate drought stress	7.976

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.620
DRR006520	Root Summer glycyrrhizin high producing strain	14.076
DRR006521	Root Winter glycyrrhizin high producing strain	9.073
DRR006522	Root Winter glycyrrhizin high producing strain	8.248
DRR006523	Root Summer glycyrrhizin low producing strain	25.917
DRR006524	Root Summer glycyrrhizin low producing strain	25.507
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.845
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.602

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.749
SRR2868004	Drought Stress (root)	26.961
SRR2967015	Control (root)	33.886

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.329
SRR9715740	Leaf	18.344
SRR9715741	Leaf	20.726
SRR9715739	Root	39.650
SRR9715742	Root	47.617
SRR9715743	Root	41.430

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.180
SRR8749028	MeJA induced 9h	34.398
SRR8749029	MeJA induced 9h	9.764
SRR8749030	Uninduced	25.275
SRR8749031	Uninduced	4.909
SRR8749032	Uninduced	5.487

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.860
SRR8400027	Control - Root	15.760