Gene detail information of Glyur000669s00020850 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01320.2 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004510673.1 | 0 | PREDICTED: clustered mitochondria protein-like [Cicer arietinum] |
| COG | YP_003573719.1 | 3.00E-23 | hypothetical protein PRU_0335 [Prevotella ruminicola 23] |
| Swissprot | tr|F4J5S1|CLU_ARATH | 1.00E-90 | Clustered mitochondria protein |
| trEMBL | tr|A0A072TYM9|A0A072TYM9_MEDTR | 0 | Eukaryotic translation initiation factor 3 subunit {ECO:0000313|EMBL:KEH18655.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00669 | 56552 | 70408 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000669s00020850.1 | PF12807.2 | eIF3_p135 | 670 | 816 | 7.30E-37 |
| Glyur000669s00020850.1 | PF13424.1 | TPR_12 | 882 | 955 | 8.80E-15 |
| Glyur000669s00020850.1 | PF13424.1 | TPR_12 | 966 | 1043 | 4.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.005 |
| SRR1783600 | control | 3.079 |
| SRR1783602 | moderate drought stress | 5.480 |
| SRR1811619 | moderate drought stress | 5.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.197 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.143 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.961 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.872 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.717 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.774 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.437 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.450 |
| SRR2868004 | Drought Stress (root) | 8.329 |
| SRR2967015 | Control (root) | 8.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.984 |
| SRR9715740 | Leaf | 87.835 |
| SRR9715741 | Leaf | 75.744 |
| SRR9715739 | Root | 0.484 |
| SRR9715742 | Root | 4.116 |
| SRR9715743 | Root | 3.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.700 |
| SRR8749028 | MeJA induced 9h | 4.583 |
| SRR8749029 | MeJA induced 9h | 2.449 |
| SRR8749030 | Uninduced | 4.120 |
| SRR8749031 | Uninduced | 5.176 |
| SRR8749032 | Uninduced | 3.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.213 |
| SRR8400027 | Control - Root | 6.757 |