Gene detail

Gene detail information of Glyur000669s00020849

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61750.1	2.00E-85	Cytochrome b561/ferric reductase transmembrane with DOMON related domain
NR	XP_006583228.1	0	PREDICTED: ferric-chelate reductase 1-like isoform X2 [Glycine max]
Swissprot	tr\|Q9M363\|B561I_ARATH	8.00E-129	Cytochrome b561 and DOMON domain-containing protein At3g61750 (Precursor)
trEMBL	tr\|I1KHV4\|I1KHV4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G06150.1}

Sequence

Transcript Sequence

>Glyur000669s00020849.1
ATTTCACATTTCCTCTCTTATAATTCAATTTTGTAGCCAACATTGCTCCTAACCTTGGNTCTCACTTGATTGAGTCTCTGAATGGAAAATAAAGGATCTTGGACTCAGATATGGCCATCTTTTGTCAGGCTGTGTATTCTGAATCTTATCTTGGATTCCAAAATCATAGCATTGGCTGATGACAGTGGAAGTAGTGGTTTTGCAGCAGAAAATACTTGCAAGAACACAAATTATCAAAGTTTCCTCCCTCCACCTTACCAGAACATATCCCATATGACATGCACACCTGTATGGCATACATATGAATTGAGGTACATCCAGAAAGATCACACCACAACTATCATATTATCTGCTCCCTACACTATTGGGTGGGTAGGAATTGGATTTTCCAGAGATGGCATGATGGTTGGTTCCAGTGCAATGGTGGGATGGGTTAATAAACACGGTCATGCAAAAATCAAGCAATTTTACCTAAGGGGTAAGAAGTCATCAGAAGTCATAGTAGACAAAGGTGAACTACCACTCAATAATGTGCCTGCAGCTGTGGCAACTAATGGAGCTGAAATTCATTTGGCATTTCAGTTGCAGATGACAACCCCATTTGAGAAGCAACCAATTTTATTGGCTTTTGGTAGTAAATATCCACAGAACCACCACCTCTCCAAGCATGAAGACAAAACAGCTATTGTATTTGATTTTTCTTCAGGTTCTAAGGGTCCTGCATCCTATGAGTTGATACAGATGAGGAAGAACCATGGAATAGTGGGTATCATAGGGTGGGGTCTAATCCTGCCTGTGGGGGCAATTGTTGCTAGATATTTCAGGCATAGGGATCCTCTATGGTTCTATCTCCATGCAATCATTCAATTTGTGGGATTCNCATTTGGGCTTGTTACAGTCCTTCTCGGATTACAACTCTATTCCAAAATGCATGCCCATATAACAGCTCACAGAGGCATAGGCATCTTTGCCCTTGTACTATGTATTCTTCAGATATTGGCTTTCTTCTTGAGACCAAACAAGGATTCCAAGTTCAGAAGAATTTGGAATTGGTATCACAGTTGGTTTGGAAGGTTGGCGCTTTTCTTNGCAGCCATTAACATAGTGTTGGGGATGCAAGCAGCGGGTGCAGGAAGTGATTGGAAGATAGGATACGGATTTCTTGTTTGTATAATAGTTGCTGCAGCTATCGTTCTGGAAGTATTGGCTTATTTGAAAAGATCAGAGATGCGTTCTCTGCCTCCTAACTTCCATATGGACCCTGTTGGAGAAGCTACATTTCCAAGTAGTAATCAAGCTAAAAGTATAACTCGCAGGAAGAATGGGATTGCTGCTAGTTTTGCACTTCCACAAGAATTGTCAATTGTCCCGTTAATCAAGCCCATACAGATCACATACTGGTTCATGTTCGGACTTAACGAGATTGAACTCTTTTTGCTTACGTTTTCTTCATTGGGTTTCTACTGGTTGGTCAAGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00669	53668	56201	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000669s00020849.1	PF03351.12	DOMON	78	143	2.70E-09
Glyur000669s00020849.1	PF03188.11	Cytochrom_B561	248	346	1.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.878
SRR1783600	control	0.891
SRR1783602	moderate drought stress	0.517
SRR1811619	moderate drought stress	0.533

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.778
DRR006520	Root Summer glycyrrhizin high producing strain	5.703
DRR006521	Root Winter glycyrrhizin high producing strain	0.350
DRR006522	Root Winter glycyrrhizin high producing strain	0.295
DRR006523	Root Summer glycyrrhizin low producing strain	1.495
DRR006524	Root Summer glycyrrhizin low producing strain	1.495
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.332
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.758

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.874
SRR2868004	Drought Stress (root)	2.588
SRR2967015	Control (root)	2.441

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.573
SRR9715740	Leaf	0.792
SRR9715741	Leaf	0.434
SRR9715739	Root	0.322
SRR9715742	Root	1.745
SRR9715743	Root	0.481

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.040
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.237
SRR8400027	Control - Root	6.957