Gene detail

Gene detail information of Glyur000669s00020847

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G61760.1	DYNAMIN-like 1B
NR	XP_004510671.1	PREDICTED: dynamin-related protein 12A-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q39828\|SDL5A_SOYBN	Dynamin-related protein 5A
trEMBL	tr\|A0A072TMB8\|A0A072TMB8_MEDTR	Dynamin-like protein 1E {ECO:0000313\|EMBL:KEH18654.1}

Sequence

Transcript Sequence

>Glyur000669s00020847.1
AGGGCGTGCACCGCCCTCGGCGATCACGGCGAGGAGAGTGCTTTGCCCACTCTCTGGGACGCCCTTCCCTCCATCGCCGTAGTTGGAGGACAGAGCTCTGGAAAATCTTCAGTGTTGGAAAGTATTGTTGGAAAGGATTTTTTGCCTCGTGGATCTGGGATTGTTACTCGGCGTCCTCTTGTTTTGCAGCTTCATAAGATTGATGAAGGGAGAGAATTTGCTGAATTTATGCACCTCCCAAGGAAGAGATTTAGTGATTTTGCTGCGGTTAGGCAGGAGATTGCTGATGAGACTGATAGAGAAACTGGTCGCTCCAAGGGTATTTCATCTGTTCCCATCCATTTGAGCATCTACTCCCCTCATGTTGTCAATTTGACTCTGGTTGATCTTCCTGGACTTACAAAAGTCGCTGTTGAGGGTCAACCAGATAGCATTGTGCAAGACATTGAAAATATGGTTCGGTCCTTTATCGAAAAGCCGAATTGCATCATTTTGGCAATATCTCCTGCAAATCAAGACCTTGCTACCTCAGATGCAATTAAGATTTCCCGTGAAGTAGATCCTAAAGGGGAAAGGACATTCGGAGTTTTGACAAAGATTGATCTTATGGACAAGGGTACTGATGCAGTTGATATCCTTGAAGGGAAATCATATAAGCTAAATTACCCTTGGATTGGTGTTGTTAATCGCTCCCAAGCTGATATCAACAAAAATGTTGATATGATTGCTGCTCGGCGAAGAGAGAATGAGTACTTTTCTAGTACTCCGGAATATAGACATCTTGCTCCCAGAATGGGCTCTGTGCATCTAGGAAAGGTGCTATCTAAGCATTTGGAAACTGTTATCAAGTCTCGGATCCCAGGTCTTCAATCACTGATTAGCAAGACTATAATTGAATTGGAGACAGAATTGAGCCGTATTGGAAAACCTATTGCTGCTGATACTGGAGGGAAGTTGTACATGGTAATGGAAATCTGTCGAACTTTTGATCAGATTTTTAAAGATCATCTTGATGGCATACGGCCTGGTGGTGAGAAAATCTATCAAGTATTCGATAATCAATTCCCAGCAGCTCTGAAAAGACTGCAGTTTGACAAACATCTATCAATGGACAATGTGCGGAAACTAATAACTGAAGCGGACGGGTATCAACCTCATCTCATCGCTCCTGAGCAAGGATACCGCCGTCTTATTGAATCTTGCATAGTATCAGTTAGGGGCCCTGCTGAAGCAGCTGTTGATGCGGTACATGGAATTTTGAAGGATTTGATTCAGAAGTCTATGAGTGAGACAATGGCAAGTAGTAAATTGATTAATTTATGTTATGAATTAAAGCAGTACCCTACCTTGAAAGTAGAACTTGGAAGTGCAGCTGTTGAATCATTGGAGAGGATGAGAGATGAAAGTAAGAAAGCAACTCTGCTGTTGGTAGACATGGAATGTGGTTATTTGACTGTTGAATTTTTTCGCAAACTTCCCCAAGANGCAGAGAAGGGTGGAAATCCAACTCACTCGCTTTTTGACAGATATAATGATGCTTATCTTCGTCGAATTGCTACCACTGTCTTGTCCTATGTGAACATAGTATGTGGGAGTCTCAGGCATACTATTCCCAAGTCCGTAGTTTATTGTCAAGTGCGTGAAGCTAAGCGCAGCTTACTGGATCATTTCTTCACAGAGTTGGGGAAAAAGGAGGGGAAACAACTAGCTTCATTGCTGAATGAGGATCCAGCAATCATGCAGCGCCGGACCTCACTTGCAAAGAGGCTAGAGCTATACAGAAGTGCACAATCAGAAATTGAGGCAGTTGCATGGGATAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00669	42782	49212	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000669s00020847.1	PF00350.18	Dynamin_N	25	200	1.20E-53
Glyur000669s00020847.1	PF01031.15	Dynamin_M	209	494	2.50E-65
Glyur000669s00020847.1	PF02212.13	GED	512	602	2.70E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.941
SRR1783600	control	1.013
SRR1783602	moderate drought stress	1.100
SRR1811619	moderate drought stress	1.052

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.691
DRR006520	Root Summer glycyrrhizin high producing strain	2.542
DRR006521	Root Winter glycyrrhizin high producing strain	0.671
DRR006522	Root Winter glycyrrhizin high producing strain	0.712
DRR006523	Root Summer glycyrrhizin low producing strain	0.834
DRR006524	Root Summer glycyrrhizin low producing strain	0.846
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.203

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.951
SRR2868004	Drought Stress (root)	1.945
SRR2967015	Control (root)	1.791

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.588
SRR9715740	Leaf	0.779
SRR9715741	Leaf	0.817
SRR9715739	Root	0.525
SRR9715742	Root	1.270
SRR9715743	Root	1.038

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.926
SRR8749028	MeJA induced 9h	1.409
SRR8749029	MeJA induced 9h	0.687
SRR8749030	Uninduced	2.232
SRR8749031	Uninduced	1.686
SRR8749032	Uninduced	1.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.679
SRR8400027	Control - Root	6.458