Gene detail

Gene detail information of Glyur000669s00020846

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24270.2	1.00E-72	Calcium-binding EF-hand family protein
NR	AFK42865.1	2.24E-135	unknown [Lotus japonicus]
Swissprot	tr\|Q75KU4\|CNBL4_ORYSJ	1.00E-90	Calcineurin B-like protein 4
trEMBL	tr\|I3SRH3\|I3SRH3_LOTJA	8.00E-136	Uncharacterized protein {ECO:0000313\|EMBL:AFK42865.1}

Sequence

Transcript Sequence

>Glyur000669s00020846.1
CAAATCGCTCCAATATTGGAGAAGAGTCAAATCTCTCTTACTCTATTCCCCTTTTCTTGTATTTAAGGAGGCATTTGGTTGGATCACCCTTTTCCTCTAGCGAAGCTATCTTTCAACAAATTTTTGAGCTAGACTTTTGTATCTGATGGGTTGCAGATCCTCAAAAGTAGCAGAAAATAAGCATCCATCCTTCCAAGTTGCTAAAGATCATAAGACTCTACCTTCAGAAAAAGTAACAGCAAATAAGCCTAAACCAGCTGGTTATGAGGATTTTTCTGTCCTTGCTTCTGAAACACCCTTTACTAAAAGAGAGGTGGAAACCTTGAAGGAGCTGTACGAAAAATTAAGCACTTCTATTGTGAAAGATGGATTTATTCGAAAGGAAGATCTTCACTTTGCTCTTTTTAGAAACAACAACAAGCGAAATCTCTTTGTGGATAGGATGTTTGATCTTTTTGATGTCAATCGCAATGGCCATATTGAGTTTGGAGAATTTGTCCGATCCTTGAGCATCTTTCATCCAAAAACTCCTGAAGCAGTCAAAATAGAATATGCATTTAAACTGTATGACTTGAGACACACTGGTTACATTGAGCGTGAAGAGTTGAAGGAGATGGTGCTGGCGATTTTGGTTGAGTCTGATCTGGTTCTCTCTGATGGTGTGGTGGAAACAATNGTGGAGAAGACATATCTGGAAGCAGACTCAAAAGGGGATGGGAGAATTGACTTAGAAGAATGGAATGAATATGTGGGAAAGAATCCATCAATACTGAAGAACATGACTCTGCCTTATCTAATGGACATAACTCTAGCATTTCCCAGTTTTATACTGAATGCAGAAACAGAAGAATCACACTTGTAGCTTCAAAATCTATCATCCAGTACAAAGAAGCATTCACTGGGGGGAAGTCTGGTCATTCATGTTTCTGAATCTCTTATATCTAAGGTGGTTATTGAAAGGGTGGCCCCTTTCCTTAGAACAANTAGAAAAGCCTGCAATTTGCCATTTTTCAGGAGGAGACAATGAAACATGCACACATTGAGAGAAAGTTTTGACACCTAGGAGCTAGTCCACTTAGGCCCCAAATGGGAAGCTTTTAAGCCCCATGAATTTGCTTTTGTTAAAACTTAAACCTCAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00669	36499	39615	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000669s00020846.1	PF00036.27	EF-hand_1	97	119	3.60E-06
Glyur000669s00020846.1	PF13499.1	EF-hand_7	134	201	8.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.348
SRR1783600	control	5.264
SRR1783602	moderate drought stress	3.398
SRR1811619	moderate drought stress	3.301

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.392
DRR006520	Root Summer glycyrrhizin high producing strain	8.013
DRR006521	Root Winter glycyrrhizin high producing strain	2.621
DRR006522	Root Winter glycyrrhizin high producing strain	2.685
DRR006523	Root Summer glycyrrhizin low producing strain	2.258
DRR006524	Root Summer glycyrrhizin low producing strain	2.744
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.471
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.317

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.977
SRR2868004	Drought Stress (root)	51.205
SRR2967015	Control (root)	42.249

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.320
SRR9715740	Leaf	15.507
SRR9715741	Leaf	23.375
SRR9715739	Root	0.758
SRR9715742	Root	1.938
SRR9715743	Root	2.135

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.256
SRR8749028	MeJA induced 9h	23.644
SRR8749029	MeJA induced 9h	69.009
SRR8749030	Uninduced	55.460
SRR8749031	Uninduced	295.907
SRR8749032	Uninduced	217.892

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.969
SRR8400027	Control - Root	15.348