Gene detail information of Glyur000667s00025250 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24095.1 | 2.00E-61 | Putative thiol-disulphide oxidoreductase DCC |
| NR | XP_003613326.1 | 8.87E-93 | Nucleic acid binding protein [Medicago truncatula] |
| COG | YP_003798443.1 | 2.00E-20 | hypothetical protein NIDE2813 [Candidatus Nitrospira defluvii] |
| Swissprot | tr|Q9SSR1|Y1259_ARATH | 1.00E-15 | DCC family protein At1g52590, chloroplastic (Precursor) |
| trEMBL | tr|G7K2V8|G7K2V8_MEDTR | 3.00E-93 | Thiol-disulfide oxidoreductase DCC {ECO:0000313|EMBL:AES96284.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00667 | 120780 | 123887 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000667s00025250.1 | PF04134.7 | DUF393 | 62 | 173 | 2.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.485 |
| SRR1783600 | control | 4.648 |
| SRR1783602 | moderate drought stress | 3.758 |
| SRR1811619 | moderate drought stress | 3.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.691 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.588 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.765 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.170 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.247 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.011 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.138 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.847 |
| SRR2868004 | Drought Stress (root) | 2.217 |
| SRR2967015 | Control (root) | 1.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.690 |
| SRR9715740 | Leaf | 3.073 |
| SRR9715741 | Leaf | 2.822 |
| SRR9715739 | Root | 2.731 |
| SRR9715742 | Root | 1.762 |
| SRR9715743 | Root | 1.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.673 |
| SRR8749028 | MeJA induced 9h | 4.476 |
| SRR8749029 | MeJA induced 9h | 8.504 |
| SRR8749030 | Uninduced | 5.539 |
| SRR8749031 | Uninduced | 2.603 |
| SRR8749032 | Uninduced | 2.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.304 |
| SRR8400027 | Control - Root | 3.468 |