Gene detail information of Glyur000667s00025247 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70210.1 | 3.00E-93 | CYCLIN D1;1 |
| NR | XP_007157500.1 | 0 | hypothetical protein PHAVU_002G074800g [Phaseolus vulgaris] |
| Swissprot | tr|P42751|CCD11_ARATH | 3.00E-121 | Cyclin-D1-1 |
| trEMBL | tr|V7CH74|V7CH74_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW29494.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00667 | 104321 | 107622 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000667s00025247.1 | PF00134.18 | Cyclin_N | 85 | 213 | 8.70E-30 |
| Glyur000667s00025247.1 | PF02984.14 | Cyclin_C | 216 | 321 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.108 |
| SRR1783600 | control | 23.026 |
| SRR1783602 | moderate drought stress | 21.113 |
| SRR1811619 | moderate drought stress | 21.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.162 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.691 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.982 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.082 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.016 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.151 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.630 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.506 |
| SRR2868004 | Drought Stress (root) | 2.984 |
| SRR2967015 | Control (root) | 2.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.503 |
| SRR9715740 | Leaf | 0.552 |
| SRR9715741 | Leaf | 0.876 |
| SRR9715739 | Root | 5.452 |
| SRR9715742 | Root | 14.488 |
| SRR9715743 | Root | 12.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.032 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.028 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.031 |
| SRR8400027 | Control - Root | 36.983 |