Gene detail

Gene detail information of Glyur000667s00025242

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G15415.2	Protein phosphatase 2A regulatory B subunit family protein
NR	XP_004502031.1	PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform-like [Cicer arietinum]
Swissprot	tr\|Q8RW96\|2A5G_ARATH	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform
trEMBL	tr\|G7J6P7\|G7J6P7_MEDTR	Protein phosphatase 2A regulatory B subunit family protein {ECO:0000313\|EMBL:AES71629.1}

Sequence

Transcript Sequence

>Glyur000667s00025242.1
CTCTGCATATTTTTTTTATTATATTCCATTTTTTGTTCTTTCCTTCTGTACTGTTCTCTGTTTTTACACACACACACACACACACACACACACACATAACTAAAATACACAATCAAATTGGGTTCATCAACACCTTTCTCTCACTAGGGTTTATGGGTCGGTGCCCATATTTCCCACTTCACTCTTTCTGATTTTCTTCTATTTTTTCCCTCGCCTCTCCCACTGAGGTTCTTCTCAGTCTCACTTTCACTGTAAGTACTTTTCTCCTGTTCATGCTGTCAATTTCTTATAATCACTGCTTCATGTGCTGAGAATCGTCACTTTTTGTGTGTGTGTGTGTACAGAATCTGGGAGCTAGTGAGTATGATTTTGTAGATAATTTTGAGATATTTTGTGATTAGGGTATTTGGGGTATGATTGCAATTGTAAATGACCCTCCTTTGTGTAGTTGCACTCAGTTTGAATGTTGAGGCTTTGATTAGTTTTGTAGAAAAATTGGGGTTAGGATTTTTCTAGGTTTTGGGTGTTCTAGATATGATAAAACAGATACTTGGTAAAATACCACGCAAGCCTTCAAAATCATCACACAGTGATTCCAACGGTGATGGAGGGTTGGTCAATGGTGGTTCCTTATTGAACTCATCTTATGGGCTTAGTTCTTCCAATGGCACCTTGAAATCCAATTCAGCTTCTTCAAAATCTTCGAATTCTGCGAATGGGACTTTTGCACCTTACTCGACGAGTTCAAGTAAAACAAACCAAGCTAAGAAATCAGCTCCTGCAATTGCATCCCAAGTCGGTTCCATAATGGCTCCGGGAGTTTATGAGGCTTTGCCGGGTTTCCGGGACGTTCCTAGCTCGGAAAAGCCGAATCTTTTCATAAGGAAGTTAAATATGTGTTGCGTTGTATTTGATTTTAATGATCCTGTCAAGCATCTTAAAGAGAAGGACATCAAGAGGCAGACTTTGCTTGAGCTTGTTGATTACATTTCATCCGTGAATTCGAAGTTCAATGAAGTGACAATGCAGGAGGTCACAAAGATGGTAGCAGCAAATCTGTTTCGAACTCTACCATGTTCTAATCATGATGGTAAGGTTGCTGAAGCATATGATCTCGAAGAAGAGGAACCGATGTTGGAACCAGCATGGAGTCATCTGCAGATTGTGTATGAAATTCTCTATAGGTTTGTGGCTTCATCAGAGACGGATGCAAAGCTTGCTAAAAGATACATTGATCATTCATTTGTGCTGAGACTGCTTGACCTCTTTGACTCCGAGGACCAAAGAGAGAGGGAATACTTGAAGACTATTCTTCATCGTATTTATGGGAAGTTCATGGTACATCGGCCATTTATTAGAAAAGCTATCAACAACATCTTTTACCAGTTCATATTTGAGACAGAGAAACACAATGGAATTGCAGAGTTGCTGGAGATATTGGGCAGCATAATTAATGGATTTGCTTTGCCATTGAAGGAAGAGCATAAGCTGTTCCTTGTCCGTGCATTGATCCCTCTTCACAAGCCGAAGTGTGTCGCAATGTATCATCAACAGCTTTCTTATTGCATTACACAGTTTGTTGAGAAGGATGTCAAGTTAGCTGATACAGTGATTGGAGGCCTTCTGAAATATTGGCCCGTAACTAATAGTGCAAAGGAAGTTATGTTCCTTGGTGAACTGGAGGAAGTTTTAGAAGCCACTCAAGCAGCAGAATTTCAGCGCTGTGTGGTGCAATTGTTCCATCAAATTGGTAGGTGCCTCAACAGTCTACACTTTCAGGTCGCTGAACGGGCATTGTTTCTGTGGAACAATGATCATATTAGAAATTTGATCATACAAAACTGCAAAGTGATACTACCTATAATATTCCCTGCTTTGGAGAAAAATGTGCGGGGCCACTGGAACCAAGCTGTGCAGAGTTTGACCCTGAATGTGAAAAAAATATTCTCGGATGCTGATCCAGCACTCTTTGACGAGTGCATGATCAGATTCCAAGAAGATGAAATCAAGGAGCGACAGAAGCAAGAGAAACGGGAATCCACCTGGAAGAAGTTGGAAGATGTGGCCGCGTCCAAGTCTGTAAGCAATGAATCAGTTCTTGCCTCAAGGTTCGTGTCTTCTGTCACCATTGCTACAGCATAAATCAACTTGCAATTACAGGGTGGTTGCGAAGAGCCATTGGATATTCAAGTTTAAGTCTGGACCCCCATGACTAGGAACTAAAGTGAATGAATGCATTCGGTTGGAGGTATGGTACCTTTAACTTCCTGCAAGAAATTAAGAGTCTAGAGTTATTATCGACACATGGTTGGTTGCTGGTGGTTTTCTGGGCTTTCTGACTCGTCCTTTGTGCCCTTCGGCTATGTTGCTGTTGAACCATGAGGTGTATATGTGCTATAAGGGTCATGTAATTTATAATAGGCAGTGCTTGTTTAGCTTTCTAGCCATTTAGATTGTGCAGTGATAAAAAGCAATCCTTTTCCTTTTGCTGTCCCTCGTTCTGTGCTTTTAACATTGGTCATTTTCTATTATTTTCCAGCCTTAAGAAGCCAAGTTGATGTGCACTTTCTTCTGTTAGTTGCTATTTGTCTTGTATTCGCTGAACTGGCTGTTATGGCGGTTTTATTTTTAACTGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00667	64090	67945	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

cellular_component
GO:0000159 protein phosphatase type 2A complex

molecular_function

GO:0005488 binding

GO:0008601 protein phosphatase type 2A regulator activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000667s00025242.1	PF01603.15	B56	100	511	2.60E-175

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.029
SRR1783600	control	11.102
SRR1783602	moderate drought stress	11.939
SRR1811619	moderate drought stress	11.949

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.818
DRR006520	Root Summer glycyrrhizin high producing strain	18.686
DRR006521	Root Winter glycyrrhizin high producing strain	8.521
DRR006522	Root Winter glycyrrhizin high producing strain	8.292
DRR006523	Root Summer glycyrrhizin low producing strain	33.178
DRR006524	Root Summer glycyrrhizin low producing strain	33.243
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.761
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.605
SRR2868004	Drought Stress (root)	25.824
SRR2967015	Control (root)	30.120

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.647
SRR9715740	Leaf	38.775
SRR9715741	Leaf	57.672
SRR9715739	Root	16.812
SRR9715742	Root	37.263
SRR9715743	Root	32.903

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.063
SRR8749028	MeJA induced 9h	14.253
SRR8749029	MeJA induced 9h	7.072
SRR8749030	Uninduced	5.875
SRR8749031	Uninduced	3.652
SRR8749032	Uninduced	4.685

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.750
SRR8400027	Control - Root	29.243