Gene detail

Gene detail information of Glyur000667s00025237.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65310.1	8.00E-38	homeobox protein 5
NR	XP_004502034.1	1.77E-110	PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Cicer arietinum]
Swissprot	tr\|P46667\|ATHB5_ARATH	4.00E-44	Homeobox-leucine zipper protein ATHB-5
trEMBL	tr\|G7J6Q0\|G7J6Q0_MEDTR	6.00E-110	Homeobox associated leucine zipper protein {ECO:0000313\|EMBL:AES71632.1}

Sequence

Transcript Sequence

>Glyur000667s00025237.1
GCTAAACAGTGAGGCTGGCTGGCAGTGTTTTCTGTGAGCGTGTGTCTCTTTGATTAGATAATGATTAGATAGACAAAAAAATTTGATTGCTTTTCACATTTTTGTCNTATATATCCTGTGTATCTTGCTGGATTCACCGTTTTGCTATGATCTGGTTACATGTGAATCCACCCTATGGAGAAAAAAAATTGAGAATATAAAAGTAAACTGTTTGTGGGTCTTGAAAACAACAACAGCACAGTATTAAGCAACACAATTTTTATTTCTATCATCATCATCATCTCATCTGTTATCCCACCCTCCTTCTGTTTCCTACCTTAGTATTATATATCTTTGCCCAAAAGCACAGAGTGGAGGATCTGCTTTAAGTCTCTTTTGGCCTCNCAAGTAATGAAGAGGCTTCTGAACAATTCAGATACTATGGCTTCTTTGCTATCTATGTGCCCATCAAAAGTTAATGCAGGGGTGAATAATAATCAGAGGAATGATACAAAGGGTTACAGTGAAGAGTTTCAAGCAATGCTAAATAGATTGGAGCAAGAAGATAGCTATGAGGAGGATGCTGGTAGCTCAGTGTTGGAGAAGAAAAGGAGGCTCAGTTTTGATCAGGTCAAAGCCTTAGAGAAGAGTTTTGAGTTTGACAACAAGCTAGAGCCAGAGCGAAAGGTGAAGCTAGCAGAAGAACTAGGCTTGGAACCAAGACAGGTTGCGATCTGGTTCCAGAATCGCCGAGCACGTTGGAAAACCAAGCAATTGGAGAGAGACTATGGCATTCTCAAGTCCAATTTTGATGTCCTCAAGTTGAGAGAGTTGAAAGCCAAGATGTTTATAGTTGACAGCAATAATGAGTGTGAGAAAGAAGGATCTCCCATTTCAAGGGTTGGAGACAGAGNAGGACCATCAGAGAGCAATTCAAGTGGTGTGATTAAGGAAGAAATTAGCAATGTTGATTCGCCTTTGTGTTTCAATGGATCTTTACCAAGTTCAAGTTCAATGATAAATTGGCTTCACTACTCCGATTCAAGAGGGTCTCCTGGTANAGTGTTTCAGAACCACCACTCTATGAGAATGGAGGAGCAGAATTTCTTTAGCATCAATGAATTCTGCAGTTTCTTTTCAGTAGATCAATCCCCTACCCTGTAATTGGATGAATCGTTCAAGAAATAATGCCACTGCTAAGAGTTCATAAGTGATAATCTAATAGAAAATTGCTTGGTTAAAAAAAATGAGTTTTATCTTTTATGGTCATTGAAGAATGAAGAATACGAGTTTTGTAATAGAATAGAGATCAATCATAGAAGATTCAAATAATTCCTACTTAAGTATGCATCTTTAGTTTATGATGCATTTTCCTTATATTTTGATTATCCCTGCCAAAGAAACTGAAAGAAATGAATATTGACCACATATGTCTAATATCTTCATTTAGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00667	34371	36227	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000667s00025237.1	PF00046.24	Homeobox	66	118	1.10E-16
Glyur000667s00025237.1	PF02183.13	HALZ	120	137	1.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.487
SRR1783600	control	37.078
SRR1783602	moderate drought stress	25.261
SRR1811619	moderate drought stress	24.855

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.576
DRR006520	Root Summer glycyrrhizin high producing strain	49.195
DRR006521	Root Winter glycyrrhizin high producing strain	24.153
DRR006522	Root Winter glycyrrhizin high producing strain	23.490
DRR006523	Root Summer glycyrrhizin low producing strain	50.220
DRR006524	Root Summer glycyrrhizin low producing strain	50.125
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.414
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.450

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.702
SRR2868004	Drought Stress (root)	3.801
SRR2967015	Control (root)	2.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.323
SRR9715740	Leaf	0.715
SRR9715741	Leaf	0.614
SRR9715739	Root	8.317
SRR9715742	Root	21.154
SRR9715743	Root	21.411

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.932
SRR8749028	MeJA induced 9h	3.427
SRR8749029	MeJA induced 9h	6.107
SRR8749030	Uninduced	4.134
SRR8749031	Uninduced	0.053
SRR8749032	Uninduced	0.336

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	77.039
SRR8400027	Control - Root	58.191