Gene detail information of Glyur000667s00025232 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08000.1 | 1.00E-35 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | XP_003528518.1 | 3.46E-68 | PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Glycine max] |
| COG | YP_003267833.1 | 8.00E-24 | RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9LIS2|RBG4_ARATH | 1.00E-28 | Glycine-rich RNA-binding protein 4, mitochondrial (Precursor) |
| trEMBL | tr|K7L326|K7L326_SOYBN | 1.00E-68 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G33790.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00667 | 7847 | 9495 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000667s00025232.1 | PF00076.17 | RRM_1 | 44 | 114 | 1.20E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.422 |
| SRR1783600 | control | 6.357 |
| SRR1783602 | moderate drought stress | 4.449 |
| SRR1811619 | moderate drought stress | 4.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.822 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.688 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.745 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.421 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.421 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.283 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.469 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.930 |
| SRR2868004 | Drought Stress (root) | 4.038 |
| SRR2967015 | Control (root) | 2.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.038 |
| SRR9715740 | Leaf | 3.150 |
| SRR9715741 | Leaf | 1.939 |
| SRR9715739 | Root | 2.650 |
| SRR9715742 | Root | 2.702 |
| SRR9715743 | Root | 2.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.093 |
| SRR8749028 | MeJA induced 9h | 5.379 |
| SRR8749029 | MeJA induced 9h | 2.947 |
| SRR8749030 | Uninduced | 2.205 |
| SRR8749031 | Uninduced | 1.608 |
| SRR8749032 | Uninduced | 1.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.064 |
| SRR8400027 | Control - Root | 12.043 |