Gene detail information of Glyur000665s00020427 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58003.1 | 8.00E-126 | C-terminal domain phosphatase-like 4 |
| NR | XP_004507725.1 | 0 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q00IB6|CPL4_ARATH | 2.00E-164 | RNA polymerase II C-terminal domain phosphatase-like 4 |
| trEMBL | tr|I1JGN5|I1JGN5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G36420.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00665 | 98209 | 104609 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000665s00020427.1 | PF03031.13 | NIF | 244 | 423 | 3.00E-26 |
| Glyur000665s00020427.1 | PF00533.21 | BRCT | 454 | 522 | 5.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.503 |
| SRR1783600 | control | 5.494 |
| SRR1783602 | moderate drought stress | 6.155 |
| SRR1811619 | moderate drought stress | 6.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.081 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.807 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.167 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.503 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.315 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.309 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.752 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.485 |
| SRR2868004 | Drought Stress (root) | 13.019 |
| SRR2967015 | Control (root) | 13.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.894 |
| SRR9715740 | Leaf | 10.996 |
| SRR9715741 | Leaf | 12.014 |
| SRR9715739 | Root | 1.809 |
| SRR9715742 | Root | 4.706 |
| SRR9715743 | Root | 3.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.597 |
| SRR8749028 | MeJA induced 9h | 7.881 |
| SRR8749029 | MeJA induced 9h | 6.728 |
| SRR8749030 | Uninduced | 4.332 |
| SRR8749031 | Uninduced | 2.926 |
| SRR8749032 | Uninduced | 3.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.865 |
| SRR8400027 | Control - Root | 12.657 |