Gene detail

Gene detail information of Glyur000665s00020424

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56950.2	1.00E-80	small and basic intrinsic protein 2;1
NR	XP_004493299.1	3.55E-138	PREDICTED: probable aquaporin SIP2-1-like [Cicer arietinum]
Swissprot	tr\|Q9M1K3\|SIP21_ARATH	3.00E-100	Probable aquaporin SIP2-1
trEMBL	tr\|I3SRL3\|I3SRL3_LOTJA	2.00E-137	Uncharacterized protein {ECO:0000313\|EMBL:AFK42905.1}

Sequence

Transcript Sequence

>Glyur000665s00020424.1
CCATAACATAGACTCCAATAAAATAGAACCATAATTTAAAATACCAAAAATATACAATATTGATTTTTGCTTTTTTAACTCCCAAGTCGCAATCTATTCTATCTAAAGTCTAAACAAACACAAGTGGAGTGGCTGTGGCGCAACCCCGATTCAATTTACAATTTTTCATAAAAAAGAAAAAGTTTTGCAACGCAAGTANACAACCGTGTTAGTATTACTGTTTATAATTTTGTTCCGAAAACGCAATAATTCATTGTCCTTCCTGCCATCTCCATTTTCACATAGCCTCATAGACATAGGGAGCTTGTCTGTTTCATATTCCAAAGTAACCGTATTATAATATCAGAGACCGCTTTTGGCGTCGTACAGCAACAAAAAAAAATCTTCATTCTTCACCAACAAAAAATACATGGGCATGGGCATGGGCATGTAGTAGATTAGATTAGATTCGATTCCAATTCCGTTCTTTCGTGGTTTTGTTCCTTCCTTCCATCCAAAATTCTTCATTTTTGTTTGTTGTTGTTGTTGTTGAAGCCAGAAGGAGGATAGATAGAGATAGAGATAGATGGGAGGAAATGGGGTTGTTATTGTGGTGTCAGATTTTGTGTTGTCTTTGATGTGGGTGTGGTCTGGTGTCCTGGTTCGGATATTCGTCTTCCAATACCTGGGATTCCCTCATGCCCATCTCGCTTCTGAGGTTGTAAAGCTTGCTCTCTCCGTCGCCAACATGTTCCTCTTTGCCTTCCTCGCCAACCTCACCCGTGGTGGGGCCTACAACCCCCTCACCGTCTTGTCCAATGCCATCTCTGGGGATTTCCACAACTTCCTTTTCTGCGTTGGTTCTAGAATCCCCGCCCAGGTGGTTGGATCTATTGTTGGAGTTAGGCTTCTTATTGATACCATTCCCGAAGTAGGACGTGGACCACGTTTGACTGTAGACATTCATCGGGGTGCATTGACAGAAGGGTTACTAACATTTGCAATTGTANCCATTTCGCTTGGGCTTACCGCAAAAATTGGTGGAAGTTTCTTCATGAAGACATGGATTTCCAGCCTCTCTAAGTTAACACTTCATATACTTGGCTCTGACCTGACTGGTGGCTGTATGAACCCCGCGTCTGTAATGGGATGGGCTTATGCTCGAGGGGATCACATAACAAAGGAGCACTTCCTTGTATACTGGCTTGCCCCTATNCAGGCAACTATTTTGGCAGTGTGGACATTCAAATTGCTAGTCCGACCTGTGAAAGAAGATAATAAAACAGGCTCAAAAAGTAAATCGGATTGAAGGAACTTCATTTTTTGTACCAAATGCCTGATTCTATCTGGCTTTCATTGATTATTTGTGTAGGTGGTGGGGTAAATGTATTAGCAATTAAAGTTATATGGTTTCATATGTTTGACAAGCATAAAGAAGTTTAAAGTCTTGCCAGTTGTAAAATTATGAGTGTCTTGGCATGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00665	89141	92442	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000665s00020424.1	PF00230.15	MIP	9	218	2.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.554
SRR1783600	control	3.447
SRR1783602	moderate drought stress	2.443
SRR1811619	moderate drought stress	2.644

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.014
DRR006520	Root Summer glycyrrhizin high producing strain	4.939
DRR006521	Root Winter glycyrrhizin high producing strain	2.443
DRR006522	Root Winter glycyrrhizin high producing strain	2.350
DRR006523	Root Summer glycyrrhizin low producing strain	7.111
DRR006524	Root Summer glycyrrhizin low producing strain	6.687
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.275
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.224

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.157
SRR2868004	Drought Stress (root)	11.867
SRR2967015	Control (root)	9.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.253
SRR9715740	Leaf	39.792
SRR9715741	Leaf	26.337
SRR9715739	Root	3.586
SRR9715742	Root	6.429
SRR9715743	Root	4.858

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.834
SRR8749028	MeJA induced 9h	2.470
SRR8749029	MeJA induced 9h	3.478
SRR8749030	Uninduced	4.318
SRR8749031	Uninduced	2.558
SRR8749032	Uninduced	2.265

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.005
SRR8400027	Control - Root	6.916