Gene detail

Gene detail information of Glyur000665s00020422

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56940.1	0	dicarboxylate diiron protein, putative (Crd1)
NR	AFK38079.1	0	unknown [Lotus japonicus]
COG	YP_007146237.1	2.00E-168	Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q6SJV8\|CRD1_GOSHI	0	Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic (Precursor)
trEMBL	tr\|I3SCT7\|I3SCT7_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK38079.1}

Sequence

Transcript Sequence

>Glyur000665s00020422.1
TTATAGTTGTTGTCCTCACTCCTCACTTGTTAAGTCCTCAAAAACCTCAAAGCTCATAGCTTTGCTTTGCTTCTTCCTCTCCCCCNCAACCCCACCATTGTTTTCTGCTTCCAATTATGGCAGCAGAGATGGCTCTTGTGAAACCCATTTCCAAATTCAGCAATGTTGCTCCCAAATTTGGAAGAACAGGTTCTTCATATTCCAACAACAAGTTCAGCATCATAAGAATGTCTTCCACAGCTACCCCTTCAACAGCCACAAAGCCAGGCAAGAAAGTAAACAAAACTGCCATCAAGGAGACCCTTTTGACACCAAGGTTCTACACCACTGACTTTGATGAGATGGAGACCCTTTTCAACACTGAGATCAACAAGAACCTCAACCAGGCTGAGTTTGAAGCCCTGCTTCAGGAGTTCAAGACTGATTACAACCAGACCCACTTTGTGAGGAACAAGGAGTTCAAGGAGGCTGCTGACAAGATTGATGGCCCTCTCAGGCAGATCTTTGTGGAGTTCCTTGAGAGGTCTTGTACTGCTGAATTCTCTGGCTTCCTTCTCTACAAAGAGCTTGGAAGGAGGCTCAAGAAAACCAACCCTGTGGTGGCTGAGATTTTCTCTCTGATGTCTAGGGATGAAGCCAGGCATGCTGGGTTTCTGAACAAGGGTTTATCTGATTTCAACTTGGCTTTGGACTTGGGTTTCCTGACAAAGGCTAGAAAGTACACATTCTTCAAGCCCAAGTTTATCTTCTATGCTACATATCTGTCTGAGAAAATTGGATACTGGAGATACATAACCATATACAGACATCTCAAGGCCAACCCTGAGTACCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAGGATGAGAATAGGCATGGAGACTTCTTCTCTGCCTTGATGAAGGCACAGCCACAATTTCTTAATGACTGGAAGGCAAAGTTGTGGGCTCGATTCTTCTGTCTTTCGGTTTATGTCACAATGTATCTCAATGATTGCCAACGCACAGCTTTCTATGAAGGCATTGGACTTGACACAAAAGAATTTGACATGCATGTCATCATTGAGACAAACCGCACAACGGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAGAACCCAGAGTTCAAGCGAAGATTGGACCGGATGGTGGAGATAAACCAGAAGATTCTTGCTGTTGGTGAGAGTGATGACATTCCAGTGGTGAAGAACTTAAAGAGGATTCCACTGATTGCTGCCCTGGTGTCTGAACTCTTTGCTACATATCTAATGCCACCAATTGAGTCAGGATCCGTAGATTTTGCAGAGTTTGAACCAAAGCTTGTGTACTGAAGTTGTGTATAAAATTCCTTATTTCCTTTTGATCTCTATCATAATGTTCATCTTGAGTGCCACTAGTACTGCTGCCAAAGACAGTGAGGAAACATTTGCCATGATGAGATCCTTATTAGTTTGAATCATCTTTTCTCTTTTGTATCTCTTTTTGTTTGAAAGTTCATTAGAAATACTCACATTATGAGCTACTTATCAAGAGATGATTCTTTCCTTACTCTTTTATTCCAATTGGAAGGTCTAACCAGCAAAGTCTCCTATAGCCCTCAGACACTGTTCCTTAGCTGTTGATTTTGGTTTGTCGAATTATTTTACGCTTTTAATAATCACCCTTCACACTTCTATTTAGACAAACACTTGCTCTTTCTCAGAAAAAAAATGCAGTAAAGAATTCAGCTGTTTCTTTTATGAAAAGAATGAAGAATGTGAACACAAAGTTTCAAATACCAGTAAGCAACAATATTGAAAAAGCTCCAGAAAGTAATTCCTTTGTTCTTAGAGAATAAAAGCATTCATGTTGCCATTGGCCAACAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00665	85614	88481	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04035	E1.14.13.81, acsF, chlE	EC:1.14.13.81	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process

GO:0015979 photosynthesis

GO:0015995 chlorophyll biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0046872 metal ion binding

GO:0048529 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000665s00020422.1	PF02915.12	Rubrerythrin	132	265	6.60E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.375
SRR1783600	control	6.500
SRR1783602	moderate drought stress	10.087
SRR1811619	moderate drought stress	9.957

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.538
DRR006520	Root Summer glycyrrhizin high producing strain	6.588
DRR006521	Root Winter glycyrrhizin high producing strain	1.077
DRR006522	Root Winter glycyrrhizin high producing strain	1.154
DRR006523	Root Summer glycyrrhizin low producing strain	2.941
DRR006524	Root Summer glycyrrhizin low producing strain	3.002
DRR006525	Leaf Summer glycyrrhizin high producing strain	647.531
DRR006526	Leaf Summer glycyrrhizin high producing strain	645.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.710
SRR2868004	Drought Stress (root)	44.280
SRR2967015	Control (root)	13.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	542.055
SRR9715740	Leaf	589.956
SRR9715741	Leaf	441.762
SRR9715739	Root	8.978
SRR9715742	Root	15.790
SRR9715743	Root	14.807

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.753
SRR8749028	MeJA induced 9h	13.875
SRR8749029	MeJA induced 9h	7.217
SRR8749030	Uninduced	7.009
SRR8749031	Uninduced	0.546
SRR8749032	Uninduced	3.677

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.595
SRR8400027	Control - Root	33.092