Gene detail information of Glyur000665s00020420 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56930.2 | 4.00E-121 | DHHC-type zinc finger family protein |
| NR | XP_004493297.1 | 0 | PREDICTED: probable S-acyltransferase At3g56930-like isoform X4 [Cicer arietinum] |
| Swissprot | tr|Q5PNZ1|ZDH21_ARATH | 5.00E-142 | Probable protein S-acyltransferase 3 |
| trEMBL | tr|I1N8L1|I1N8L1_SOYBN | 0 | S-acyltransferase {ECO:0000256|RuleBase:RU079119} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00665 | 70713 | 84091 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000665s00020420.1 | PF01529.15 | zf-DHHC | 86 | 267 | 3.40E-42 |
| Glyur000665s00020420.1 | PF01529.15 | zf-DHHC | 561 | 660 | 1.20E-21 |
| Glyur000665s00020420.1 | PF01529.15 | zf-DHHC | 676 | 711 | 0.00013 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.177 |
| SRR1783600 | control | 6.207 |
| SRR1783602 | moderate drought stress | 6.194 |
| SRR1811619 | moderate drought stress | 6.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.649 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.436 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.859 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.883 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.520 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.656 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.566 |
| SRR2868004 | Drought Stress (root) | 16.212 |
| SRR2967015 | Control (root) | 16.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.315 |
| SRR9715740 | Leaf | 4.076 |
| SRR9715741 | Leaf | 3.523 |
| SRR9715739 | Root | 5.116 |
| SRR9715742 | Root | 6.209 |
| SRR9715743 | Root | 6.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.988 |
| SRR8749028 | MeJA induced 9h | 9.893 |
| SRR8749029 | MeJA induced 9h | 7.739 |
| SRR8749030 | Uninduced | 6.456 |
| SRR8749031 | Uninduced | 5.694 |
| SRR8749032 | Uninduced | 5.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.266 |
| SRR8400027 | Control - Root | 14.729 |