Gene detail

Gene detail information of Glyur000665s00020418.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04940.2	2.00E-142	SU(VAR)3-9 homolog 1
NR	XP_006576757.1	0	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max]
COG	NP_295256.1	3.00E-21	hypothetical protein DR_1533 [Deinococcus radiodurans R1]
Swissprot	tr\|Q93YF5\|SUVH1_TOBAC	0	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1
trEMBL	tr\|K7KEJ7\|K7KEJ7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G27441.1}

Sequence

Transcript Sequence

>Glyur000665s00020418.1
ATGGAACATAATTTGGGTCAAGACTCTCAACCTGCATCTGGTTCCTTTGATAAGTCTAGGGTTTTAAATGTTAAGCCATTGAGAACTCTTGTCCCTGTGTTCCCTTCACCATCCAACCCCTCTTCATCTTCAACCCCACAAGGTGGTGCTCCTTTTGTTTGTGTCTCCCCTTCTGGTCCTTTCCCATCTGGGGTTTCACCCTTCTACCCTTTCTTCATCTCACCAGAGTCCCAGAGGCTTTCTGAACAAAATGCAGCGGCCCCGACCAGTCAACGCGCGACACCGATATCTGCCGCGGTTCCGATTAATTCATTCAGGACACCGGCTCGGGCAGCAACAAATGGAAACNTGGGTTCGTCGAGGAGGAATGCCCGGGGCCGTGGGCAGATTGCTGAGGAAGATGGATACAGTAATGCCGAGGCGAATGAAGTTATTGATGTGGAAGATGGAACTGGGGATGGGAGTTCAAAGCCCAAGAAGAGGGGAAGGGCACGGCGTGGTAGTGGTAGTGGTAGTGCTCCTGCTGCTGCGGCTTCTGTTGGTGTTGATCTAGATGCGGTGGCTATTGACATTCTCAAAACAATTAACCCCATGGTTTTTGATGTGCTAAATCAACCTGATGGTACCAGGGACGCGGTATCATATACACTTATGATATACGAAGTGATGCGAAGAAAGCTTGGGCAAATTGGAGAGACAACAAAAGATACCAGTTCTGGTGCACAGCGGCCTGATTTGAAGGCTGGTAATGTCATGATGAGTAAAGGGATTCGGACTAACAGCAAGAAACGGATTGGAATTGTGCCTGGTGTTGAGATTGGGGACATTTTCTTTTTCAGATTCGAGTTGTGCTTAGTGGGGTTACATGCTCCTTCTATGGCCGGAATCGATTACATGGGTACCAAAATCAGTCAAGAGGAAGAGCCCTTAGCTGTCAGTATTGTCTCATCNGGAGGATATGAAGATAATGTGGAGGATGGGGATGTGCTGATTTACAGNGGACAAGGTGGAGCTAGCCGTGATAAGGGAGCAAGTGATCAAAAGCTTGAGAGGGGTAATCTTGCTTTGGAGAAGAGCATGCATAGAGGTAATGATGTGAGAGTAATTAGGGGTATGAAGGATGTAGCACATCCGACTGGGAAGGTATATGTTTATGACGGTCTTTACAAGATTCAGGATACATGGGTGGAGAAAGCAAAATCTGGTTTCAATGTATTTAAGTATAAACTAATCCGGTTGCCTGGGCAACCTGAAGCATATATGACATGGAAATCCATTCAACAATGGACAGATAAGTCTGCTTCGAGATCNGGGGTTATATTGCCTGATCTTACTTCTGGGGCTGAAAATGTACCTGTTTGTCTCGTGAACGATGTTGATAATGAGAAGGGCCCTGCATATTTCACTTACTCCCCCACTCTCAAGAATTTGAAGCTAATAGCTCCTGTGGAATCTTCTGCTGGATGTTCATGTGTTGGTGGATGTCAACCTGGAAACTTTNACTGTCCTTGCATTCAAAAGAATGGAGGTTATCTCCCGTATTCTGCAGCTGGGCTACTTGCAGACTTAAAATCCGTGGTATATGAGTGTGGCCCTTCCTGTCAGTGCCCCCCTAATTGCCGGAATCGGGCTTCCCAAGTTGGTTTGAAATTCCGTTTGGAGGTGTTTAGAACCAAGAATAAAGGTTGGGGTCTTAGATCGTGGGATCCTATTCGTGCTGGAACTTTCATATGTGAATATGCGGGGGAAGTCATAGACAATGCTAGAGTAGAGGAGCTTGGTGGTGAAAATGAAGATGACTACATTTTCGATTCTACTCGCATTTATCAGCAGCTTGAAATTTTTCCNGGTGACACCGAAGCTCCAAAGATCCCATCCCCCCTTTATATAACAGCGAGAAATGAAGGGAATGTAGCTCGATCTAGGTATGGCAGACAGCAGGATGGAATTCAATTATGTAGAAAGATGTTAGCAGACCAATATTTCCTTTTTGGCCTAGTGAATTGGGCACAAGAAAGTTCTCAGTTAGAAAAAAAAGGCTATATTAGTATATTGGAGGTGGTGTCATCTTATATCCTGGTGGTGACTGAATTGGTCTCGATCTTGCAACATTTCTGGGCTATTGTTATGTCATGGCATATCATATCACAGTCAATCTGTATGATGCACATTATCTATGGCAGCCCCTGCAATTGCCATGTTGCATGGGTTAGGTCACCTTGCACAGGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00665	62353	66430	+

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11420	EHMT	EC:2.1.1.43	Lysine degradation	map00310
			Longevity regulating pathway - mammal	map04211

Gene Ontology

biological_process

GO:0016571 histone methylation

GO:0034968 histone lysine methylation

cellular_component
GO:0005634 nucleus

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0018024 histone-lysine N-methyltransferase activity

GO:0042393 histone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000665s00020418.1	PF02182.12	SAD_SRA	262	416	2.00E-58
Glyur000665s00020418.1	PF05033.11	Pre-SET	444	543	1.40E-19
Glyur000665s00020418.1	PF00856.23	SET	562	631	2.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.890
SRR1783600	control	35.229
SRR1783602	moderate drought stress	39.282
SRR1811619	moderate drought stress	38.352

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.432
DRR006520	Root Summer glycyrrhizin high producing strain	36.392
DRR006521	Root Winter glycyrrhizin high producing strain	35.510
DRR006522	Root Winter glycyrrhizin high producing strain	34.113
DRR006523	Root Summer glycyrrhizin low producing strain	51.102
DRR006524	Root Summer glycyrrhizin low producing strain	51.090
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.761
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.792

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.427
SRR2868004	Drought Stress (root)	50.953
SRR2967015	Control (root)	57.063

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.422
SRR9715740	Leaf	26.542
SRR9715741	Leaf	36.918
SRR9715739	Root	38.317
SRR9715742	Root	79.285
SRR9715743	Root	69.873

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.848
SRR8749028	MeJA induced 9h	64.050
SRR8749029	MeJA induced 9h	39.648
SRR8749030	Uninduced	35.138
SRR8749031	Uninduced	20.947
SRR8749032	Uninduced	18.718

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.588
SRR8400027	Control - Root	45.819