Gene detail information of Glyur000665s00020414 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56900.1 | 3.00E-51 | Transducin/WD40 repeat-like superfamily protein |
| NR | AFK47201.1 | 6.49E-69 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8GWR1|AAAS_ARATH | 1.00E-60 | Aladin {ECO:0000303|PubMed:21189294} |
| trEMBL | tr|I3T3V9|I3T3V9_LOTJA | 2.00E-69 | Uncharacterized protein {ECO:0000313|EMBL:AFK47201.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00665 | 21407 | 23956 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.961 |
| SRR1783600 | control | 10.802 |
| SRR1783602 | moderate drought stress | 11.562 |
| SRR1811619 | moderate drought stress | 10.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.128 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.842 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.970 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.222 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.255 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.482 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.433 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.696 |
| SRR2868004 | Drought Stress (root) | 8.980 |
| SRR2967015 | Control (root) | 9.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.490 |
| SRR9715740 | Leaf | 5.944 |
| SRR9715741 | Leaf | 3.987 |
| SRR9715739 | Root | 7.992 |
| SRR9715742 | Root | 5.578 |
| SRR9715743 | Root | 7.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.547 |
| SRR8749028 | MeJA induced 9h | 14.781 |
| SRR8749029 | MeJA induced 9h | 14.481 |
| SRR8749030 | Uninduced | 2.905 |
| SRR8749031 | Uninduced | 0.960 |
| SRR8749032 | Uninduced | 3.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.975 |
| SRR8400027 | Control - Root | 12.412 |