Gene detail

Gene detail information of Glyur000665s00020411

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19750.1	5.00E-64	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
NR	XP_004493310.1	3.85E-121	PREDICTED: protein sym-1-like [Cicer arietinum]
Swissprot	tr\|Q9ZS51\|PMP22_ARATH	8.00E-14	Peroxisomal membrane protein PMP22
trEMBL	tr\|V7CV44\|V7CV44_PHAVU	3.00E-109	Uncharacterized protein {ECO:0000313\|EMBL:ESW34014.1}

Sequence

Transcript Sequence

>Glyur000665s00020411.1
CGGTTGGGTTTGCAACTTTGCATATATACAGAGTATATAGACGTTACAACAGGTCGCGGTTGAGTACATGAAAAACGCAAAACCTGTATAACACTAAAAAAATCCCTTTTTTCTGATTCGAAAATGACGATGATGTCATTGTCTGGTGGAGCATGTTGTGCACTCACCCATAAACCCCTTCTCTTATCACGCGCCCTCAGCTTTTGGCGTCAACAACCCACTCCCCTTCAATTCCAGAGATGCTCTCCTTCTTCTTCTTCTTCTTCTTCGCTCCACCCTCGCCCTTCCCCCTTCAACAACTCCACCCTCTCCTTTAACCGCACTGGGGTCCCCTTCACCCAACCGCGCCTCCGTAATTCTCGCCTCTCCGCCCTCTCNGGCGACGGTTCCGGCGGAACTGGTGGAAGCGGTGGTGGCTCCGGCGGTGATTCGAATTCCGGCGGCAATGATGGAGGTGGAGGGGAAAGTTGGTCCTTCTTGTCATGGTACTTGGCTCTTCTTGGAAAATACCCNGTTCTAGTAAAGGCTCTAACATCTGCAATTTTGACACTAATTGGAGATTTGGTTTGCCAGCTTGTGATAGACCAAGTGCAGTCACTGGACTTCAAGAGGACATTCGTCTTCACTCTGCTCGGTTTTGTGTTAGTGGGTCCAGCATTGCATTTCTGGTACTTGTATCTGAGTAAATTGGTTACACTTCCTGGAACATCAGGGGTACTTTTGCGGCTTGTACTTGATCAGTTCTTTTTTTCTCCTACATTCATTGGAGTTTTCTTAGCTTCATTGGTGACACTAGAGGGAAGGCCATCACAAGTTGTACCTAAGCTTAAACAGGAGTGGTTTTCTGCTGTTGTAGCGAACTGGCAATTATGGATACCTTTCCAATTTCTCAACTTTAGATTTGTCCCGCAACAATTTCAGGTCCTTGCTGCTAATGTTGTTGCTTTGGCATGGAATGTTATTCTTTCATTTAAAGCACACAAAGAAGTTCTTCCAAAATAGGAACTTGTGAGGAGCTGCAGGAGCTGTATTCGGGTCCTTTCTTAAATGTTATGGTAATTTAGCTGTGAACATGAAGACATGGCTATTGTATAAACTGGCATGTAGAATTTTTGCATGCACTTTGGTCAGTGCAGTCTTCCTCCCTGTGCTCCCTAAGATCCTGCTTCATTCAGACCAGCAAATTCAAAAAGAAAATGATTTTTGAAAAGTAAAGTTTATATCTGATGTTTTTTTGCGTAACATTATGAAATTGAGTTTGCATTCCCAACTTCATGACTGCCACTACCAATAACTAGATGAAGTTAAATGGTTTGAACTTTGAAACANTCACTTAACAAACTCCAGATATGATTTGTCTTGAAAATTTTATTATATTAATCATATTTAATTGTAAAGGGTAAAGCGTGGGGGAAGAAAAACCAAGGGGAAGTGCATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00665	10612	14530	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000665s00020411.1	PF04117.7	Mpv17_PMP22	223	287	1.50E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.687
SRR1783600	control	6.162
SRR1783602	moderate drought stress	2.353
SRR1811619	moderate drought stress	2.565

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.410
DRR006520	Root Summer glycyrrhizin high producing strain	4.363
DRR006521	Root Winter glycyrrhizin high producing strain	1.556
DRR006522	Root Winter glycyrrhizin high producing strain	2.019
DRR006523	Root Summer glycyrrhizin low producing strain	4.446
DRR006524	Root Summer glycyrrhizin low producing strain	5.406
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.343
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.253

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.457
SRR2868004	Drought Stress (root)	8.562
SRR2967015	Control (root)	6.197

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.850
SRR9715740	Leaf	10.037
SRR9715741	Leaf	7.662
SRR9715739	Root	3.236
SRR9715742	Root	2.299
SRR9715743	Root	3.839

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.281
SRR8749028	MeJA induced 9h	2.610
SRR8749029	MeJA induced 9h	4.129
SRR8749030	Uninduced	1.005
SRR8749031	Uninduced	0.466
SRR8749032	Uninduced	0.518

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.847
SRR8400027	Control - Root	8.125