Gene detail information of Glyur000664s00026065 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27970.1 | 4.00E-38 | CDK-subunit 2 |
| NR | XP_011009277.1 | 1.25E-47 | PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Populus euphratica] |
| Swissprot | tr|Q9SJJ5|CKS2_ARATH | 7.00E-49 | Cyclin-dependent kinases regulatory subunit 2 |
| trEMBL | tr|A9PE37|A9PE37_POPTR | 1.00E-47 | Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00664 | 110651 | 111615 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000664s00026065.1 | PF01111.14 | CKS | 3 | 72 | 1.60E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.008 |
| SRR1783600 | control | 8.001 |
| SRR1783602 | moderate drought stress | 4.766 |
| SRR1811619 | moderate drought stress | 4.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.831 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.672 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.318 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.286 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.344 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.516 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.261 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.167 |
| SRR2868004 | Drought Stress (root) | 16.524 |
| SRR2967015 | Control (root) | 23.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.224 |
| SRR9715740 | Leaf | 0.600 |
| SRR9715741 | Leaf | 1.643 |
| SRR9715739 | Root | 15.586 |
| SRR9715742 | Root | 4.045 |
| SRR9715743 | Root | 7.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.733 |
| SRR8749028 | MeJA induced 9h | 22.560 |
| SRR8749029 | MeJA induced 9h | 18.923 |
| SRR8749030 | Uninduced | 0.391 |
| SRR8749031 | Uninduced | 0.606 |
| SRR8749032 | Uninduced | 1.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 49.398 |
| SRR8400027 | Control - Root | 36.631 |