Gene detail information of Glyur000664s00026064 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07790.1 | 2.00E-45 | Histone superfamily protein |
| NR | AFK45166.1 | 9.86E-84 | unknown [Lotus japonicus] |
| Swissprot | tr|Q1S9I9|H2B1_MEDTR | 5.00E-80 | Probable histone H2B.1 |
| trEMBL | tr|I3SY24|I3SY24_LOTJA | 4.00E-84 | Histone H2B {ECO:0000256|RuleBase:RU000451} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00664 | 108359 | 108790 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000664s00026064.1 | PF00125.19 | Histone | 52 | 119 | 2.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.676 |
| SRR1783600 | control | 36.293 |
| SRR1783602 | moderate drought stress | 20.792 |
| SRR1811619 | moderate drought stress | 20.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 69.009 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 56.257 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.055 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.215 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.176 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.086 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 402.145 |
| SRR2868004 | Drought Stress (root) | 184.104 |
| SRR2967015 | Control (root) | 166.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 88.984 |
| SRR9715740 | Leaf | 3.541 |
| SRR9715741 | Leaf | 30.914 |
| SRR9715739 | Root | 50.162 |
| SRR9715742 | Root | 33.240 |
| SRR9715743 | Root | 43.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 445.882 |
| SRR8749028 | MeJA induced 9h | 222.671 |
| SRR8749029 | MeJA induced 9h | 324.309 |
| SRR8749030 | Uninduced | 28.062 |
| SRR8749031 | Uninduced | 7.688 |
| SRR8749032 | Uninduced | 17.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 246.396 |
| SRR8400027 | Control - Root | 216.644 |