Gene detail information of Glyur000664s00026061 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28200.1 | 1.00E-37 | C2H2-type zinc finger family protein |
| NR | KEH38879.1 | 1.53E-88 | C2H2-type zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q681X4|ZAT5_ARATH | 4.00E-47 | Zinc finger protein ZAT5 |
| trEMBL | tr|A0A072VA47|A0A072VA47_MEDTR | 6.00E-89 | C2H2-type zinc finger protein {ECO:0000313|EMBL:KEH38879.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00664 | 88253 | 89203 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000664s00026061.1 | PF13912.1 | zf-C2H2_6 | 136 | 161 | 2.60E-10 |
| Glyur000664s00026061.1 | PF13912.1 | zf-C2H2_6 | 236 | 261 | 7.90E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.406 |
| SRR1783600 | control | 4.678 |
| SRR1783602 | moderate drought stress | 4.721 |
| SRR1811619 | moderate drought stress | 4.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.029 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.486 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.352 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.344 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.556 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.473 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.566 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 62.223 |
| SRR2868004 | Drought Stress (root) | 62.450 |
| SRR2967015 | Control (root) | 78.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.964 |
| SRR9715740 | Leaf | 18.463 |
| SRR9715741 | Leaf | 19.177 |
| SRR9715739 | Root | 17.273 |
| SRR9715742 | Root | 23.606 |
| SRR9715743 | Root | 18.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.358 |
| SRR8749028 | MeJA induced 9h | 15.302 |
| SRR8749029 | MeJA induced 9h | 2.890 |
| SRR8749030 | Uninduced | 6.476 |
| SRR8749031 | Uninduced | 0.081 |
| SRR8749032 | Uninduced | 0.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.221 |
| SRR8400027 | Control - Root | 27.293 |