Gene detail

Gene detail information of Glyur000664s00026060

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_004487559.1	0	PREDICTED: uncharacterized protein LOC101497558 isoform X1 [Cicer arietinum]
trEMBL	tr\|K7M344\|K7M344_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G39631.1}

Sequence

Transcript Sequence

>Glyur000664s00026060.1
CCGAACTGGAACTTGAAAGTCCANGATGCAAATCGGGGAAGAAGTGGCGCAGTGCAGCAAGTGTTGCAAACTGGAAACAAAGTGCCAAAAGTAAAAACAAACAAAAAGTTAAAAGAAATTCAGATGGGAAAAAAAGAAGGATGAAGCTGGAAATCGAAGATTTTGCAAGCAACAAACAAGACATTGATTGTGTTGTTGATGGAGGCACGAAACCCTTCTTCTCCCTCTCCGGTTCGAGTCCTCATTCGCCCTCCACCTTCTTCTGCTCCTTCTTCCTCTTCCACCGATCATCCCTCATCGGCGACACCTCGCTCCTCCGATGGCGTGGTGGTCGTCGGTTTCATCGCTCGACGGCACGACGATTCTACTCACCTCCTCAACCGAGTCATCGACTCCAACGTCTTTGCTTCCGGGAACCTCGACAAGCCCTTACTTCTCGACGACGAGGAAGCCAGGGAGTGGTTCAAGCGCAGGAGAATCAGCTACTTCCGTGACCATGATAAGGGGATTCTGTTCCTCCACTTCTCCTCCACTCACTGCCCCGCCACCCACGCCTCCGAGCCGGAGCCCTCGCCGGGATTCGACNCCGTCGTCGAAGAGCACCAGTTCGGTGACCTCCACGGAATGCTTTTCATGTTCTCCGTTTGCCATGTTATCATATATATTCAGGAGGGGTCACGCTTTGATACTAGGATTTTAAGGAATTTTCGTGTGCTACAAGCAGCCAAGCATGCTATGGCTCCGTTTGTTAGGTCACAGGGTACACCACCCCTGCCGTCTAGATCGCAGCCTTCTTCGTCGTCCTCCCGGCCTTCCTCGTCGGCAAACAGTTCTTCTCCGGGTAGAGGTGGTGGTGGTGGTGGTAACTTGAGTCGCANTGCGTCCGCATTGTCTCTCATGTCAGGTTTAGGTTCTTATACTTCTTTGTTTCCGGGACAGTGCATACCTGTGATGCTGTTTGTATTTGTCGATGACTTCTCCAGTTTGCCGAATTCAAGCACAAATGGGGAGGACTCTTCGGATGCCTCGTCGCTTAATCAGTCTTCTAGTTTGAGTAGTGTAGCCAAGACAAATTTGCCTGCTAAAGGTTCTGGTTCAGTGGTTGTGCTGGCACGCCCCACAAGTCGGTCAGAAGGTGGATTTAGGAAGAAATTGCAGGCGTCTCTTGAAGCACAAATTCGCTTTCTGGTTAAGAAATGCCGTACATTATCCGGTTCTGAAATTAGTCATTCTGGTGTGAGAACTGGGGGNACGTCAACTTCTGCACCTCTGTTTTCACTCGATGCATCAAGGGCAGTTGTCTTGTTAGATCGGCTTTCGATTCAAAAAGGCGAGTCTCTTGAGTTTGCCACTGGACTTGTTGAAGATGTCTTGAATGGGAAAGCAACCTCAGATTCCCTTCTGATGGAAATCCATGGTCAAAGTGCAAGCAAAGAAGATTTAACATCTGTTAAGGAGTTCATTTACAGGCAATCTGATATTTTGAGAGGGAGAGGGGGACTAGTAAATACCAACAGTGGCTCAGCTGCTGGTGTCGGTATGGTTGCTGTTGCAGCAGCTGCAGCTGCTGCCTCAGCTGCATCTGGGAAAACATTTACTACTCCTGATCTTCCAAATTTTGAAGCTTGGTTAACTTCAAGTCTTCACATCTTGAGTAGAGTTCTCTGTGCAAAAGGGGGTTGCTTGGATGAGTTTGAAATTACTAAAAGAAAACCTCGTCCAAGGAACACTGTCTCCCCTGCAGTGGAAGGGTCTTTGAAGGGTACAAATCCTCTGGACGTGGCAGTGTCTTGGTTACAATGTGGTAGAGGGCTGAACACTAAGTTTTCGACTTCGTGGTGCCAAAGAGCCATTCCAGCTGCAAAGGAGATTTATTTGAAAGATTTGCCTACTTGTTATCCTACTTCACAACATGAAGCTCATTTAGATAAGGCTTTGCATGCATTTCGCTCAATGGTAAAAGGACCTGCAGTGCATCTCTTTACAAAAAAGTTGGAAGAGGAATGCACTTCCATTTGGAAATCTGGAAGGCAACTATGTGATGCTGTTAGTTTGACAGGCAAACCATGCATGCACCAAAAACATGATGTTGAGACTAATAATTCAGACTTGGGAGCTTCGCCCAAGCCACATTCAAGTGGCTATTTTTTCCTCCATGCTTGTGCTTGTGGTCGTTCACGACAGTTACGCCCAGATGCCTTTGATTTTAAATCAGCTGATGCTAGTTGCTTCTCTGACTGTGATAAGCTACTTCCCGCAGTCAAACTACCNGAAATTGAAGTTGCAGGGCCTGTCCAATCTTCCTCTTGGAGTTTGCTGCGTATTGGAGGTGCAAGATACTATGAATCTTCTAAAGGCTTACTTCAAAGTGGATTCTGTGCTACTGAGAAATTTCTTCTGAAATGGACAATATACCTAGAGAAACAGAAAAGACCAAATGGTTCAACAGAGATTATAGTGAAGCAAAGTCCTGTAACTAGGGCACCCAAGGTTGAATATAATGAAGATGCGAAGAAAACCGATGATAGACAACCCCACCCTACTGTGCAGAGTGGAGTGGAAGACCAAAGAACATCTTTAGATATTATCAAAGCTGATAACAAAAAGATAAGTTTTGGTAGAGGTTTTCCTATTTTCAAAATGAGGAAACCTTTTTCTGAGGTTGTTGCGGGATCAGCGGCTGTTGATTCTGGATTCCCTCCTCTTCAGCAAAGGAAATTGCCGACATCAGGTTCAGAAAAAGGTCTGAAGCAAAGCAGGCCAAGTGATCAGAATGCAGAAAGGGTCAATGCAGCTATCAATAATCAAATATCTCCAAAATCTCAAGATATATCGTTTACCGAGGGACCTCTTGATGGTAATGGCAATAATAGCTGCAGAGATGGTGACCCTTTTTTGAGGATAGGTAGCAACGTAGTACCTGTATACATGAATGGTGGTGAAAGGAGCAAACCACAATCTTCTTTAAAGCATGTAATAGTATATGTTGGATTTGAGCATGAATGCCCCCGTGGCCACCGTTTCCTGTTAAATGCAGAACATCTCACTGAACTTGAATCTTCATACGCACTATATGAAGAATCTCATATATCTTATTCTATGGAGCCTGCTGGTAGAAATCAGGCACATCATACTAAAGTGAGCAAGAATGCTTCCTGGGCCAAAGTTCAGCGAAACTCAAATGAAATTCTTTCTGCATCCATAAATAAGGAAAGAGATGGGGACAAATCAAATGAAATTATTCCTAATGGTGATTTAAATTCGGATGGACTAATATATACTTCCATTCCACTGAAGGAACAAAATTTGACATCTGTGAATATATTGGCAAAACCCCCCAATCTTATCAAAGATTCTGGAGGGGATCTTCAAGCTATTAGCATGGATGGTGATGAACTTGCATTTTCCATGCTTAACCGAAACTTGCCTATCTACATGATTTGTCCTCACTGCAGGCATTCTAGGAATAAGAAGGATGCACCAAAGGTTAAGTTTGCCAGTGGTATCTCACAGCTTAAAAGGATTTTTCTGGTCACACCTGCNTTTCCTGTAATACTAGCAACGTGCCCTGTTGTGCAATTTGAGACGTCATGCCTGCCTCCATCAATTCCAGATCGTGAACAAAAATTGCAGTTTAGTCTTGGATGTCAAGTGATCTTGCCACCAGAGAGTTTCCTTACCCTTAAATTACCATTTGTGTATGGTGTGCAGCTTGAAGATGGAAACAAGCATCCACTTAACCCCTTTGAACAACAGCCAGAAATGACTGCCTGGATTACCAAGGGCACAGTACTGCAGATATTGTCCAAGGGGAGCAATGATGATGGATATCAAACACAGTAAAAGCTTGCTAAATCTTTGAGTGGCATATTTATAATGAAAATGAAAGGATGTCAATAGCTTCTTCAAAACTCAGGTGAAGTTCAACCCCCCTTTCTTCCTTTTATTGAAAACTTAATGGACAAAAGCATGCACCTTGCAACAATCATCTGATTATAGAAACTAGATGTGATATATTAAGGGAAGCAAAATTATATTATTTGCAGAATGATTACAATGTCTAGTTCCTCCTAATCTCAATCAAAATTGTATGCTGTCCTCTTCCTTCCTAGAGAAGAGGCAGTGATAGAGGACCACAAAATGTTAACGTTATTTTTTT

Protein Sequence

>Glyur000664s00026060.1
MEARNPSSPSPVRVLIRPPPSSAPSSSSTDHPSSATPRSSDGVVVVGFIARRHDDSTHLLNRVIDSNVFASGNLDKPLLLDDEEAREWFKRRRISYFRDHDKGILFLHFSSTHCPATHASEPEPSPGFDXVVEEHQFGDLHGMLFMFSVCHVIIYIQEGSRFDTRILRNFRVLQAAKHAMAPFVRSQGTPPLPSRSQPSSSSSRPSSSANSSSPGRGGGGGGNLSRXASALSLMSGLGSYTSLFPGQCIPVMLFVFVDDFSSLPNSSTNGEDSSDASSLNQSSSLSSVAKTNLPAKGSGSVVVLARPTSRSEGGFRKKLQASLEAQIRFLVKKCRTLSGSEISHSGVRTGGTSTSAPLFSLDASRAVVLLDRLSIQKGESLEFATGLVEDVLNGKATSDSLLMEIHGQSASKEDLTSVKEFIYRQSDILRGRGGLVNTNSGSAAGVGMVAVAAAAAAASAASGKTFTTPDLPNFEAWLTSSLHILSRVLCAKGGCLDEFEITKRKPRPRNTVSPAVEGSLKGTNPLDVAVSWLQCGRGLNTKFSTSWCQRAIPAAKEIYLKDLPTCYPTSQHEAHLDKALHAFRSMVKGPAVHLFTKKLEEECTSIWKSGRQLCDAVSLTGKPCMHQKHDVETNNSDLGASPKPHSSGYFFLHACACGRSRQLRPDAFDFKSADASCFSDCDKLLPAVKLPEIEVAGPVQSSSWSLLRIGGARYYESSKGLLQSGFCATEKFLLKWTIYLEKQKRPNGSTEIIVKQSPVTRAPKVEYNEDAKKTDDRQPHPTVQSGVEDQRTSLDIIKADNKKISFGRGFPIFKMRKPFSEVVAGSAAVDSGFPPLQQRKLPTSGSEKGLKQSRPSDQNAERVNAAINNQISPKSQDISFTEGPLDGNGNNSCRDGDPFLRIGSNVVPVYMNGGERSKPQSSLKHVIVYVGFEHECPRGHRFLLNAEHLTELESSYALYEESHISYSMEPAGRNQAHHTKVSKNASWAKVQRNSNEILSASINKERDGDKSNEIIPNGDLNSDGLIYTSIPLKEQNLTSVNILAKPPNLIKDSGGDLQAISMDGDELAFSMLNRNLPIYMICPHCRHSRNKKDAPKVKFASGISQLKRIFLVTPAFPVILATCPVVQFETSCLPPSIPDREQKLQFSLGCQVILPPESFLTLKLPFVYGVQLEDGNKHPLNPFEQQPEMTAWITKGTVLQILSKGSNDDGYQTQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00664	71230	77406	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000664s00026060.1	PF10220.4	DUF2146	40	185	4.00E-10
Glyur000664s00026060.1	PF10220.4	DUF2146	540	678	3.00E-30
Glyur000664s00026060.1	PF10220.4	DUF2146	1067	1199	1.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.339
SRR1783600	control	4.412
SRR1783602	moderate drought stress	6.190
SRR1811619	moderate drought stress	6.142

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.026
DRR006520	Root Summer glycyrrhizin high producing strain	4.071
DRR006521	Root Winter glycyrrhizin high producing strain	2.659
DRR006522	Root Winter glycyrrhizin high producing strain	2.395
DRR006523	Root Summer glycyrrhizin low producing strain	4.142
DRR006524	Root Summer glycyrrhizin low producing strain	4.281
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.016
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.978

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.924
SRR2868004	Drought Stress (root)	6.744
SRR2967015	Control (root)	7.520

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.511
SRR9715740	Leaf	3.618
SRR9715741	Leaf	3.867
SRR9715739	Root	1.168
SRR9715742	Root	5.919
SRR9715743	Root	5.586

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.506
SRR8749028	MeJA induced 9h	4.149
SRR8749029	MeJA induced 9h	0.869
SRR8749030	Uninduced	1.215
SRR8749031	Uninduced	0.610
SRR8749032	Uninduced	0.423

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.563
SRR8400027	Control - Root	9.541