Gene detail information of Glyur000664s00026057 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28150.1 | 6.00E-133 | Domain of unknown function (DUF966) |
| NR | XP_007150145.1 | 0 | hypothetical protein PHAVU_005G130600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LX14|UFC_ARATH | 5.00E-33 | Protein UPSTREAM OF FLC |
| trEMBL | tr|I1LTN3|I1LTN3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G30230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00664 | 54678 | 58944 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000664s00026057.1 | PF06136.8 | DUF966 | 36 | 425 | 4.50E-117 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.211 |
| SRR1783600 | control | 1.238 |
| SRR1783602 | moderate drought stress | 2.578 |
| SRR1811619 | moderate drought stress | 2.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.436 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.337 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.323 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.305 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.531 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.619 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.438 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.925 |
| SRR2868004 | Drought Stress (root) | 5.725 |
| SRR2967015 | Control (root) | 5.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.830 |
| SRR9715740 | Leaf | 7.478 |
| SRR9715741 | Leaf | 6.388 |
| SRR9715739 | Root | 0.137 |
| SRR9715742 | Root | 2.705 |
| SRR9715743 | Root | 1.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.337 |
| SRR8749028 | MeJA induced 9h | 3.374 |
| SRR8749029 | MeJA induced 9h | 1.804 |
| SRR8749030 | Uninduced | 0.262 |
| SRR8749031 | Uninduced | 0.037 |
| SRR8749032 | Uninduced | 0.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.116 |
| SRR8400027 | Control - Root | 5.328 |