Gene detail

Gene detail information of Glyur000664s00026046

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36870.1	1.00E-71	xyloglucan endotransglucosylase/hydrolase 32
NR	XP_003539787.1	5.68E-135	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32-like isoform X1 [Glycine max]
COG	YP_003830841.1	7.00E-08	endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316]
Swissprot	tr\|Q9SJL9\|XTH32_ARATH	4.00E-102	Probable xyloglucan endotransglucosylase/hydrolase protein 32 (Precursor)
trEMBL	tr\|I1LR80\|I1LR80_SOYBN	2.00E-135	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}

Sequence

Transcript Sequence

>Glyur000664s00026046.1
ATGCCATCATCACATTCCTCTTTCCTCCATATGATTCCTATCTTCTCTCTTTTATTCTCACTCATGATTCCTTCATTTCCTTGTAGTAGTGCTCAGGGTCCACCTTCACCAGGGTACTACCCTAGTTCCAAAATCAGCCCTGAAGTGGATTCAAGTCACTACACTCTTATCGTTCTGGATACTTTGGTTCTGCGGTTAAGCTTCAACCAGCTTTCAAACAACCAAGTCTACCCAGGAAACCATGATGAAATAGACATTGAGTTCCTTGGTACCACCCCAGATAAGCCATATGTGTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAAGATTATAGGAAGGGAAATGAAATTTCACCTTTGGTTCGANCCAACACAAGATTTTCACAACTATGCCATTCTATGGAAACCCAGTGAGATCATCTTTTTGGTGGATGATGTCCCAATAAGGAGGTATCCTAGGAAGAGTGATGCTACATTCCCTGAAAGNCCAATGTATGCATACGGATCAATATGGGATGCATCTTCATGGGCCACAGAGGATGGAAAATACAAAGCTGATTATAAATACCAACCCTTCTTTGGTAGATATAGAAACTTCAAACTACAAGGTTGCGCCACTGAATCCTCTGCCTCATGCCAGCCACCGTCTGCCTCACCTTCCAGCTCTGGCAGCCTTAGCCCTCAGCAGCTTGCTGCAATGCAATGGGTCCAAAACAATTACTTGGTCTATTACTATTGCCATGATCCTAGGAGAGACCATACACTTACTCCGGAATGCTAAGGTTCGGTTTGGTTTGGTTGAATTTGGTGTGTTTCAAATTTGCCTTTTACACTTTCAAAACAGATTGTTCNGGGAGTAACCGGATTTGCTGTGATAGAAAAAGCACACAGTTGCCACAGTCAAACATATCGGACTACTGGATCGAGATCAAATGACTCACNTTGTGAGTTTGAATTCTGTAATCTGATTTATGAAGTCCAAACTTGAGTTGTCTGATCTCAATCCAATGGTCTGAGTTGCTTGATTGTGGCAACTGCATGTTTTTTCTACTACAGGGAATCTGGATCCATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00664	5757	7800	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH16

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006073 cellular glucan metabolic process

cellular_component

GO:0005618 cell wall

GO:0048046 apoplast

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762 xyloglucan:xyloglucosyl transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000664s00026046.1	PF00722.16	Glyco_hydro_16	72	191	6.20E-38
Glyur000664s00026046.1	PF06955.7	XET_C	217	262	4.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.394
SRR1783600	control	48.918
SRR1783602	moderate drought stress	19.237
SRR1811619	moderate drought stress	19.428

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.265
DRR006520	Root Summer glycyrrhizin high producing strain	2.457
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.318
DRR006524	Root Summer glycyrrhizin low producing strain	1.350
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.757
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.901

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.062
SRR2868004	Drought Stress (root)	3.405
SRR2967015	Control (root)	5.133

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.799
SRR9715740	Leaf	1.459
SRR9715741	Leaf	0.937
SRR9715739	Root	39.794
SRR9715742	Root	10.056
SRR9715743	Root	15.454

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.062
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.750
SRR8400027	Control - Root	40.755