Gene detail

Gene detail information of Glyur000663s00030873.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G17110.1	ubiquitin-specific protease 15
NR	XP_006598161.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FPS9\|UBP15_ARATH	Ubiquitin carboxyl-terminal hydrolase 15
trEMBL	tr\|I1MJ12\|I1MJ12_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G39730.2}

Sequence

Transcript Sequence

>Glyur000663s00030873.1
CAAAGTTCCCGACTTGCATTGCATTGCATTGCTTCGTGCTGTACTTTTCTCGTACTTGGTTGGTTGGATCTCTCTCAGGTTTGAATGGTGGGCCANGGCTTATGCTGCACTTGAAGTTGGTGGTGGTTACCTAGATGCTGTTTACNTGGACTTTTAGGGGTTTATTTCTGATTAGTGATTTGGGAGGAAACTGGACATGAGTATGCTTGTGGGGATATGCTCGAACCGCGTGAATCTGATATTCCTCTCCTGTTTCTGGTCCTGGTTGTACTTCCTTTGGTGGCTTACATCTTACTTGGAAAATGGAGTGAGACTACNAAGAAGAGAAATAGGATAAATTTGCTTGCCCATTTGGCTGCTGAAGAAGGTCTGCGAGCAGAACAAATGGCTGTTGCTGATGTAATTCCTCAACTCAGTCAAGTGCATTCTTCAAAGAATGAACTTCATAAGAATGACCTTCATAAGTGTGCTAGGTGCTCTGCTTCAGCAAGAACTCGATGCTCCAGATGCAAGTCTGCTAGATATTGCTCTGGGAATTGTCAAATAATCCATTGGAGGCTAATTCACAAGCAAGAATGCCAGCAATTGGAAACTCATAAATCAAGCTCNTTTCCTCTGGCTTTCTCAGTTGAGGAATTTGGTCATGGAAGTGGCTTTTATGAAAACTTAAACAATCCCTACTTTGGTCACAATTTGAAGCAAACTTTAAGGGAGAGGGTGCCTTTGGACAATTTGGTTCACCTTCTGACGGGCACCACTGCTTCTGCCACAGCTGATTTTTCCGTATGTAATAATTCTCAACCTACCACCTTGGAGAGGAGAACTTCCCATAAATCCAACAGAGAAACACGGAGAAGAGATAATGGGTCTATATATGAATCTTCTATTGAATCTTCTGATTATAAAGCTACCAATTCTTCCTCTTCNAGTGTGGTATCAAAGGAGGCATTTATAAGACAGAAGTCAAGAAATAATGGTGATTCTGTGTTGGAGGAAGAAACTATAAAGGTCAGTTCCNGTGGCTTTGTAACTTATATCAATGATCAAGATGCTTCAAGAAACACAATGCAGGAGGATGATAACTCTCAAAGTCAATATGGAAATGCATTTGTACCAAGAAACAAATATGGAGGCTCGAGTGTGTCAAGTGCTGCAAACAGTGATAAAANTGTAGATGAATTTGAAACAGACTTTATTGCTGAAGGAGGAAATGTAGTCAAAGGGGGAAATTNTCATTCTGATGAAGCAGCACAATACAAATGCTCTTCTGAAATGACAACCAAAGGAAGTGCANAGGCTAAAAAGATATCACATCCTCCAAAGGCTAAATGTTCTAAATCACCAAATTCAACTTCAAAGACATCAATGGACTTTTATTACCCAGAAATAGATAAGAAAGTGAAAATTCCAGATGAACCAAAAGTTGCTGGAANCAGAGATACTGTCCCTTTGCATGGTAATAATGGGGCTGCAAGCATTGGAATTATGAAAATGATGGGTTTAAGGAAATCAANTAAACATACTGCACTGGCCTCCTCTGAAGGTGCTGGAGTAAGGTCCAAGAAGGTAAAGAAGATAAAGATGTTGTTTCCTTATGATGAATTTGTAAAGATTTTCCAGAGTGAAGTCTTTGGCATATGCCCCAGGGGCCTTTTGAATTGTGGGAACAGTTGCTATGCCAATGCTGTCTTGCAGTGCTTAACTTCTACAAAGCCTCTTGTCATCTATTTGCTTTATAGATCACATTCGAAAGCCTGTTGTGCTAAAGATTGGTGTCTCATGTGTGAGTTAGAGGAGCACATAATGATTTTGAGAGAAAATGGCGCTCCTCTATCCCCTAGTAGGATACTTTGGCATATGCGGAGCATAAATTGCAACATGGGAGATGGAAGTCAGGAAGACGCCCATGAATTTTTAAGGCTTCTAATTGCATCAATGCAATCTATATGTTTGGAGGGACTTGGTGGTGAGAAGAAGGTTGATCCGAGATTACAAGAAACAACTTTCGTACAACATACTTTTGGCGGTCGTCTTCAATCCAAGGTTANGTGTTTGAATTGTAATCACGAGTCAGAAAGGTATGAGAACATCATGGACCTAACATTGGAGATATTGGGTTGGGTTGAGTCACTCGAAGATGCACTGACTCAGTTTACATCCCCTGAAGATTTGGATGGAGAAAATATGTACAGATGTGGAAGGTGCACTGCATATGTTCGAGCTAGAAAGCAACTNAGCATACATGAGGCCCCTAACATCTTGACTATTGTTCTAAAGAGGTTTCAGGAAGGAAGATATGGGAAAATCAACAAGTGCATAACTTTTCCTGAAATGCTGGATATGATTCCTTTTATGACTGGGACGGGTGATGTTCCTCCACTCTACTTGCTTTATGCTGTTGTTGTGCACCTGGACACATTGAATGCATCATTCTCTGGCCATTATGTTTCGTATGTGAAAGATCTGCAAGGCAATTGGTTCAGGATAGATGATACTGAGGTTCAGCCAGTGCTAATCAATCAGGTGATGTCAGAAGGAGCATATATCTTGTTCTACATGAGGTCTTGTCCCCGTCCTCCGGTAGAGATGATTCAGCAATCAGTATCTGATTCTTCAAGGCTCTATCCATTAGAAGTGCAGAAGCCTTCTAAACCAGGACATGGCAGGCATGGCAGCCAAAGTTTTGNCCCAGAGCCTTCACCCAATGACACCTCCTCTAATGGCTTCCTTAAAAGAAGCACCAATAGGAATGTGCTGCCAGTAACACAAACCTATGCTGAAAACATAAGGCATGAGTTTTCAGATGCTGCCACATCAAGTGACTGGTCCCTTTTCACAAGCTCAGATGAGGCTTCTTTCACAACCGAGAGTACTAGGGACTCCTTCAGTACTGTGGACTATGGCGATTCCAGCAGCATGGATCCAATCTCATCTCTCTTCAACTACACCCCAGATAACAATTCCTACATGAAGTTTTCACATAGTAGGTCACTTACCAGGTTCTTCCCTCAAAAGGGTCATATTGGAAGAGTGCACAGAATTGACCACCCTAAAGATGTTAGCAATTCTTCAATTGAGTATCCACCAAATGGTAATTGTGGCATGTTTGTAAATTATGGGAGTAATCCTATGTGTGGTATTACCCGGACTTCTAGTTAGTGTGAACAGATCTGTAGTTCTTTTGGAATCCTAACCGGTTGAAATGATTAGATGGATTAGGTGCTATGCCTCAAAGTTTTCAATATTTAGTTGATTGAGGCATATAGCTCTTTTAAGCACAAATGTATTTTATT

Protein Sequence

>Glyur000663s00030873.1
MLEPRESDIPLLFLVLVVLPLVAYILLGKWSETTKKRNRINLLAHLAAEEGLRAEQMAVADVIPQLSQVHSSKNELHKNDLHKCARCSASARTRCSRCKSARYCSGNCQIIHWRLIHKQECQQLETHKSSSFPLAFSVEEFGHGSGFYENLNNPYFGHNLKQTLRERVPLDNLVHLLTGTTASATADFSVCNNSQPTTLERRTSHKSNRETRRRDNGSIYESSIESSDYKATNSSSSSVVSKEAFIRQKSRNNGDSVLEEETIKVSSXGFVTYINDQDASRNTMQEDDNSQSQYGNAFVPRNKYGGSSVSSAANSDKXVDEFETDFIAEGGNVVKGGNXHSDEAAQYKCSSEMTTKGSAXAKKISHPPKAKCSKSPNSTSKTSMDFYYPEIDKKVKIPDEPKVAGXRDTVPLHGNNGAASIGIMKMMGLRKSXKHTALASSEGAGVRSKKVKKIKMLFPYDEFVKIFQSEVFGICPRGLLNCGNSCYANAVLQCLTSTKPLVIYLLYRSHSKACCAKDWCLMCELEEHIMILRENGAPLSPSRILWHMRSINCNMGDGSQEDAHEFLRLLIASMQSICLEGLGGEKKVDPRLQETTFVQHTFGGRLQSKVXCLNCNHESERYENIMDLTLEILGWVESLEDALTQFTSPEDLDGENMYRCGRCTAYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMIPFMTGTGDVPPLYLLYAVVVHLDTLNASFSGHYVSYVKDLQGNWFRIDDTEVQPVLINQVMSEGAYILFYMRSCPRPPVEMIQQSVSDSSRLYPLEVQKPSKPGHGRHGSQSFXPEPSPNDTSSNGFLKRSTNRNVLPVTQTYAENIRHEFSDAATSSDWSLFTSSDEASFTTESTRDSFSTVDYGDSSSMDPISSLFNYTPDNNSYMKFSHSRSLTRFFPQKGHIGRVHRIDHPKDVSNSSIEYPPNGNCGMFVNYGSNPMCGITRTSS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00663	44114	53250	+

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000663s00030873.1	PF01753.13	zf-MYND	84	121	1.30E-08
Glyur000663s00030873.1	PF00443.24	UCH	477	780	2.90E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.569
SRR1783600	control	8.791
SRR1783602	moderate drought stress	7.243
SRR1811619	moderate drought stress	7.289

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.110
DRR006520	Root Summer glycyrrhizin high producing strain	8.004
DRR006521	Root Winter glycyrrhizin high producing strain	0.933
DRR006522	Root Winter glycyrrhizin high producing strain	0.960
DRR006523	Root Summer glycyrrhizin low producing strain	10.850
DRR006524	Root Summer glycyrrhizin low producing strain	10.783
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.710
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.770

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.823
SRR2868004	Drought Stress (root)	14.208
SRR2967015	Control (root)	15.398

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.739
SRR9715740	Leaf	4.644
SRR9715741	Leaf	4.596
SRR9715739	Root	1.344
SRR9715742	Root	5.725
SRR9715743	Root	4.590

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.272
SRR8749028	MeJA induced 9h	21.806
SRR8749029	MeJA induced 9h	9.930
SRR8749030	Uninduced	10.729
SRR8749031	Uninduced	8.653
SRR8749032	Uninduced	6.698

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.861
SRR8400027	Control - Root	22.614