Gene detail information of Glyur000662s00023495.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19940.1 | 0 | glycosyl hydrolase 9B5 |
| NR | AES73992.2 | 0 | glycosyl hydrolase family 9 protein [Medicago truncatula] |
| COG | YP_290232.1 | 1.00E-87 | endoglucanase [Thermobifida fusca YX] |
| Swissprot | tr|Q69SG5|GUN24_ORYSJ | 0 | Endoglucanase 24 (Precursor) |
| trEMBL | tr|G7J4Q1|G7J4Q1_MEDTR | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00662 | 117799 | 122445 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000662s00023495.1 | PF00759.14 | Glyco_hydro_9 | 57 | 515 | 1.80E-141 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.992 |
| SRR1783600 | control | 26.113 |
| SRR1783602 | moderate drought stress | 14.765 |
| SRR1811619 | moderate drought stress | 14.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.721 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.632 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.003 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.865 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.601 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.648 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.309 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.797 |
| SRR2868004 | Drought Stress (root) | 22.860 |
| SRR2967015 | Control (root) | 23.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.785 |
| SRR9715740 | Leaf | 4.404 |
| SRR9715741 | Leaf | 5.199 |
| SRR9715739 | Root | 22.887 |
| SRR9715742 | Root | 20.535 |
| SRR9715743 | Root | 22.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.665 |
| SRR8749028 | MeJA induced 9h | 8.340 |
| SRR8749029 | MeJA induced 9h | 11.246 |
| SRR8749030 | Uninduced | 4.194 |
| SRR8749031 | Uninduced | 2.633 |
| SRR8749032 | Uninduced | 3.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.090 |
| SRR8400027 | Control - Root | 36.397 |