Gene detail information of Glyur000662s00023494 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37210.1 | 8.00E-28 | lysine decarboxylase family protein |
| NR | XP_003523551.1 | 2.79E-70 | PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Glycine max] |
| COG | YP_007672300.1 | 2.00E-15 | putative lysine decarboxylase [Polaribacter sp. MED152] |
| Swissprot | tr|Q8L8B8|LOG3_ARATH | 2.00E-43 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 |
| trEMBL | tr|I1JT41|I1JT41_SOYBN | 1.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G02750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00662 | 110324 | 113815 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000662s00023494.1 | PF03641.9 | Lysine_decarbox | 104 | 150 | 2.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.882 |
| SRR1783600 | control | 3.032 |
| SRR1783602 | moderate drought stress | 4.242 |
| SRR1811619 | moderate drought stress | 4.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.461 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.046 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.032 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.090 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.115 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.678 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.410 |
| SRR2868004 | Drought Stress (root) | 19.087 |
| SRR2967015 | Control (root) | 21.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 87.484 |
| SRR9715740 | Leaf | 108.760 |
| SRR9715741 | Leaf | 68.274 |
| SRR9715739 | Root | 2.740 |
| SRR9715742 | Root | 7.041 |
| SRR9715743 | Root | 6.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.159 |
| SRR8749028 | MeJA induced 9h | 0.242 |
| SRR8749029 | MeJA induced 9h | 0.365 |
| SRR8749030 | Uninduced | 0.077 |
| SRR8749031 | Uninduced | 0.419 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.734 |
| SRR8400027 | Control - Root | 5.748 |