Gene detail information of Glyur000662s00023482 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19870.1 | 2.00E-85 | IQ-domain 32 |
| NR | KHN09103.1 | 0 | Protein IQ-DOMAIN 32 [Glycine soja] |
| Swissprot | tr|Q9FXI5|IQD32_ARATH | 1.00E-100 | Protein IQ-DOMAIN 32 |
| trEMBL | tr|K7KSN9|K7KSN9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G02841.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00662 | 21662 | 27277 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000662s00023482.1 | PF00612.22 | IQ | 132 | 150 | 0.0088 |
| Glyur000662s00023482.1 | PF00612.22 | IQ | 154 | 171 | 0.0019 |
| Glyur000662s00023482.1 | PF13178.1 | DUF4005 | 696 | 785 | 4.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.873 |
| SRR1783600 | control | 6.979 |
| SRR1783602 | moderate drought stress | 6.953 |
| SRR1811619 | moderate drought stress | 6.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.718 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.508 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.267 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.183 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.240 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.950 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.297 |
| SRR2868004 | Drought Stress (root) | 19.027 |
| SRR2967015 | Control (root) | 21.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.274 |
| SRR9715740 | Leaf | 10.130 |
| SRR9715741 | Leaf | 14.459 |
| SRR9715739 | Root | 2.717 |
| SRR9715742 | Root | 15.035 |
| SRR9715743 | Root | 11.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.551 |
| SRR8749028 | MeJA induced 9h | 10.304 |
| SRR8749029 | MeJA induced 9h | 8.052 |
| SRR8749030 | Uninduced | 3.930 |
| SRR8749031 | Uninduced | 1.596 |
| SRR8749032 | Uninduced | 2.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.107 |
| SRR8400027 | Control - Root | 18.309 |