Gene detail information of Glyur000662s00023480 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19880.1 | 5.00E-138 | Regulator of chromosome condensation (RCC1) family protein |
| NR | XP_004500953.1 | 0 | PREDICTED: protein RCC2-like [Cicer arietinum] |
| COG | YP_001821121.1 | 4.00E-14 | cell surface receptor IPT/TIG domain-containing protein [Opitutus terrae PB90-1] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 8.00E-14 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|I1JT49|I1JT49_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G02840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00662 | 12224 | 18839 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000662s00023480.1 | PF00415.13 | RCC1 | 125 | 183 | 1.80E-06 |
| Glyur000662s00023480.1 | PF00415.13 | RCC1 | 186 | 222 | 4.00E-08 |
| Glyur000662s00023480.1 | PF00415.13 | RCC1 | 292 | 338 | 2.10E-07 |
| Glyur000662s00023480.2 | PF13540.1 | RCC1_2 | 38 | 62 | 4.10E-06 |
| Glyur000662s00023480.2 | PF00415.13 | RCC1 | 107 | 165 | 1.70E-06 |
| Glyur000662s00023480.2 | PF00415.13 | RCC1 | 168 | 204 | 3.80E-08 |
| Glyur000662s00023480.2 | PF00415.13 | RCC1 | 274 | 320 | 2.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.796 |
| SRR1783600 | control | 17.950 |
| SRR1783602 | moderate drought stress | 22.404 |
| SRR1811619 | moderate drought stress | 22.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.239 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.071 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.211 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.281 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.056 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 56.050 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.599 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 90.363 |
| SRR2868004 | Drought Stress (root) | 86.595 |
| SRR2967015 | Control (root) | 99.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.572 |
| SRR9715740 | Leaf | 45.296 |
| SRR9715741 | Leaf | 49.116 |
| SRR9715739 | Root | 30.696 |
| SRR9715742 | Root | 55.463 |
| SRR9715743 | Root | 54.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 142.371 |
| SRR8749028 | MeJA induced 9h | 93.750 |
| SRR8749029 | MeJA induced 9h | 104.191 |
| SRR8749030 | Uninduced | 119.359 |
| SRR8749031 | Uninduced | 79.218 |
| SRR8749032 | Uninduced | 111.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 76.226 |
| SRR8400027 | Control - Root | 68.818 |