Gene detail information of Glyur000662s00023479 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19880.1 | 6.00E-30 | Regulator of chromosome condensation (RCC1) family protein |
| NR | XP_004500953.1 | 2.43E-49 | PREDICTED: protein RCC2-like [Cicer arietinum] |
| trEMBL | tr|I1JT49|I1JT49_SOYBN | 7.00E-49 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G02840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00662 | 11354 | 12125 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.425 |
| SRR1783600 | control | 16.294 |
| SRR1783602 | moderate drought stress | 25.261 |
| SRR1811619 | moderate drought stress | 24.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.129 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.197 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.945 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.307 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.750 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.557 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.722 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.530 |
| SRR2868004 | Drought Stress (root) | 43.482 |
| SRR2967015 | Control (root) | 57.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.624 |
| SRR9715740 | Leaf | 16.008 |
| SRR9715741 | Leaf | 19.686 |
| SRR9715739 | Root | 20.741 |
| SRR9715742 | Root | 39.181 |
| SRR9715743 | Root | 37.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.153 |
| SRR8749028 | MeJA induced 9h | 44.863 |
| SRR8749029 | MeJA induced 9h | 24.150 |
| SRR8749030 | Uninduced | 17.299 |
| SRR8749031 | Uninduced | 6.422 |
| SRR8749032 | Uninduced | 18.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 56.087 |
| SRR8400027 | Control - Root | 50.399 |