Gene detail

Gene detail information of Glyur000661s00022629

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01410.2	5.00E-11	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NR	ABO80459.1	8.98E-55	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula]
COG	YP_004102881.1	1.00E-13	ribonuclease H [Thermaerobacter marianensis DSM 12885]
Swissprot	tr\|P0C2F6\|RNHX1_ARATH	1.00E-23	Putative ribonuclease H protein At1g65750
trEMBL	tr\|A4PSD6\|A4PSD6_MEDTR	3.00E-55	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H {ECO:0000313\|EMBL:ABO80459.1}

Sequence

Transcript Sequence

>Glyur000661s00022629.1
ATGAATATACCTAGGGTGGCAGCATTGAAGGATCTTAAGTACTCTGCTAAATCCGGTGGTGACCTGACTAAACCTTGGAGTGATCTTTGGAAGCTGCAGGCGCCAGAGAAGATCAGGTTCTTTCTTTGGCTGGCTTGGCATGAATCAATCCCTACGATGCAGTCTGCTAGTTGTTCAAGATGTACTGGGGCTTTGGAAGAAAATTTATTACACTGTGTGCGAGACTGTACCTTATCTCGACAGCTCTGGGAGAAATTGGGCATGGGAACTGCAAATTTTTTCCGGTCACAGGATTTCTTCAGTTGGCAGAAGGAGGTTCTTGCTGGAACAGAGGTGGCTCGGTTCTATGCTGGCCTTTGGAGTTTGTGGTGCGGCGGGAACGCTAAATGCATTGGGGGAGAGGATGTTCTGCTTCAGAAGTTATTAAGGGCTGTCAATCTCATGGAACAAGCTATTACCAGAGGGTTCAGAGCTCAACCAGTTCCTGAGATTAGGGAACAGTGGGTGACTTGGCACCCGTCGCGAGCCAACGTCGATGGAAGCTCCATGGGCAACCCGGGACCTGCTGGATTCGGGGGACTCCTTCGTACTGGGGAGGGGGAATGGTTGCTTGGTTACTATGGATCGATTGGTGTTGCTGACAACCTCGTGGCGGAGCTGGCGGCGATTCTGTTCGGACTCACTACTGCTTGGGGTTCAGGCACTAGACGGCTGGTTTGCTACTCTGATTCGAGCTTGGCGATTGGTCTCATTCAGGGATCTGTGAATTTGAAGCACCGATATGCATCTTGGATCTGTGGAATCAAGGAGATGGTGCACTGGGATTGGCAAGTGGAGTTTCTCCATACGCTCAGAGAGGGAAACAGAAGTGCAGACGTCCTGGCGAAGATTGGAGCTCAGCAAGACGAGAAGTTTGTGCTCCTCCATGCTCCTCCGGCGGCGGTGGATTGTAATAAGGACATCTATTCCTGCTATGACCCTCATTTCGACACAGTCCACACCTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00661	115105	116754	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004523 RNA-DNA hybrid ribonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000661s00022629.1	PF13456.1	RVT_3	216	300	7.30E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.366
SRR1783600	control	8.223
SRR1783602	moderate drought stress	6.390
SRR1811619	moderate drought stress	6.095

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.043
DRR006520	Root Summer glycyrrhizin high producing strain	11.345
DRR006521	Root Winter glycyrrhizin high producing strain	5.001
DRR006522	Root Winter glycyrrhizin high producing strain	4.703
DRR006523	Root Summer glycyrrhizin low producing strain	16.620
DRR006524	Root Summer glycyrrhizin low producing strain	16.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.403
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.242

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.789
SRR2868004	Drought Stress (root)	7.584
SRR2967015	Control (root)	6.492

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	76.870
SRR9715740	Leaf	60.690
SRR9715741	Leaf	64.704
SRR9715739	Root	22.675
SRR9715742	Root	39.266
SRR9715743	Root	31.613

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.149
SRR8749028	MeJA induced 9h	33.342
SRR8749029	MeJA induced 9h	45.486
SRR8749030	Uninduced	57.660
SRR8749031	Uninduced	33.111
SRR8749032	Uninduced	52.534

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.156
SRR8400027	Control - Root	8.419