Gene detail

Gene detail information of Glyur000661s00022623

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G50250.1	FTSH protease 1
NR	XP_004500893.1	PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic-like [Cicer arietinum]
COG	YP_007143611.1	membrane protease FtsH catalytic subunit [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q9BAE0\|FTSH_MEDSA	ATP-dependent zinc metalloprotease FTSH, chloroplastic (Precursor)
trEMBL	tr\|A0A067KL39\|A0A067KL39_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP36832.1}

Sequence

Transcript Sequence

>Glyur000661s00022623.1
ATTCAAGCAGGTTGCCTCTTTCCAGTTGCCACTGGTTCTGAAGAGTGAAACGAAATCGTAGACGTAATCTCCATTTCACACTAACGTGTACTCACAATTCAACACATTTATATGTCGCAGCCAGTCTAACCGTGCAATCGGTCATTGCCCCTGTTTGGATTTTTATTTTTAAACACTCCTTGTGCAGCCAGCCACACTTGCAAGTTCCAACATTCTAGTCATTGAGTTTACCTCGCATTCACAGCGTAAAGCAGCATGGCCTTCGCCACCAGTGCTTTGCTTTCTACAAATTTCCTAGGAAGCAAGGTGCTACTATCGCCCCCAACCCCCAAAACAACCAAACCATCCGTTACGCTACCGTTATTCTTAAACGCTCAGAAGCCAATTATTAAGAATAACAAAAATTCAGAACCACTGAAATCCGNGTCTTCTCAAGCTGCTCTAGCAGCCCTTATCTTATCCTCCGCGACTCTGAATGTGACCCCTGAAGCTCTCGCCGTCGACAACATCACCACCCCTCCCCCGGTAATCGAGGCCCAGCCCAACAAACTGAGCCCATCAAATTCCTCCTCGCCCTTCTCTCAAAACCTCTCCCTCACAGCGCCCAAGCCCCAAGCCCAGGGCGCTTCTGACCTCCCAGACGGTAGCAATTGGCGCTACAGCGAGTTCTTGAATGCCGTCAAGNAGGGCAAGGTCGAGAGGGTCAGGTTCAGCAAAGACGGTTCCGCCCTCCAACTCACCGCCGTTGACGGCCGTCGAGCCTCCGTCATCGTCCCCAACGACCCCGACCTCATCGACATCCTCGCCATGAACGGCGTCGACATCTCCGTCTCCGAGGGCGAATCGGGCAACGGCCTCTTCAATTTCATCGGGAGCCTGCTGTTCCCCTTCCTCGCGTTCGCTGGGCTGTTCCTCATCTTCCGCAGGGCCCAGGGCGGGCCCGGTGGGCCGGGTGGGCTAGGCGGNCCCATGGACTTCGGCCGATCCAAGTCCAAGTTCCAGGAAGTACCGGAAACCGGGGTGACCTTCGCTGACGTGGCAGGCGCCGACCAGGCGAAGCTGGAGCTGCAGGAGGTCGTTGATTTCTTGAAGAACCCCGATAAGTACACCGCGCTGGGCGCCAAGATTCCGAAAGGGTGTCTTCTTGTGGGGCCACCGGGAACCGGGAAGACCCTTCTGGCGAGGGCTGTAGCCGGTGAAGCCGGTGTGCCGTTCTTTTCGTGTGCGGCTTCGGAGTTCGTGGAACTGTTTGTTGGGGTTGGTGCGTCTAGGGTGAGGGATTTGTTTGAGAAGGCGAAGTCGAAGGCACCGTGCATTGTGTTCATTGATGAGATCGACGCCGTTGGGAGGCAGAGAGGGGCGGGGCTCGGTGGCGGGAACGATGAGAGGGAGCAAACTATTAACCAGCTCTTGACGGAGATGGATGGCTTCTCTGGTAATTCTGGTGTCATTGTTTTGGCTGCCACTAACAGACCCGATGTTCTTGATTCCGCATTGCTTAGGCCTGGTCGATTCGATAGGCAAGTTACTGTGGACAGACCTGATGTTGCCGGTAGAGTCAAAATCCTCCAGGTGCATTCAAGAGGAAAAGCACTTGCAAAGGATGTTGACTTTGAAAAAATTGCCAGGAGAACCCCAGGGTTCACAGGGGCTGATCTGCAGAATCTGATGAATGAAGCAGCTATTCTTGCGGCCAGGCGTGACCTCAAGGAAATAAGTAAGGATGAGATATCCGATGCGCTTGAGAGGATCATTGCTGGACCAGAAAAGAAAAATGCTGTGGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTCTAGTAGGTGCTTTAATGCCTGAATATGACCCTGTAGCCAAGATATCCATTATCCCTCGAGGCCAAGCTGGTGGTCTCACCTTTTTTGCTCCCAGCGAAGAGAGACTTGAGTCTGGATTGTACAGTAGAAGCTACTTGGAAAATCAGATGGCAGTTGCACTAGGTGGAAGGGTTGCNGAAGAGGTTATTTTTGGCCGGGAAAATGTCACCACCGGAGCGTCAAATGACTTTATGCAAGTTTCCCGAGTGGCAAGGCAGATGGTTGAGAGATTTGGGTTCAGCAAAAAAATTGGACAAATTGCCATTGGCGGACCTGGTGGAAATCCATTCTTGGGTCAACAGATGTCAACGCAAAAGGATTACTCCATGGCAACTGCCGATGTAGTAGATGCGGAAGTAAGGGAACTGGTAGAGAGAGCCTATTCTAGGGCAACGCAAATTATCACAACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAGAAAGAATCTGTTGATGGTGAAGAGTTCATGAGTCTATTTATTGATGGAAAAGCTGAATTGTATGTTGCATAATGATACAGTTAAGACACAGAATCATGTTTGTACTGTAAGATACACTGAGACATGTACACTGTAAGAATCAATTAAATATATTTATCAAATTACAGGTAAAAAATTTGCACAACAGCTTATGCAAAAACAAAAACAAACTGTGTTTACACCTTTAAATGAAATGCATTTCCAACTTAAAGTATACCAAAAGGGTCATTTCCCTCCTCGTTGCCTTTTCTCTTCGAGAGCAGTGGCGTCACTCAGCATGTCAGCTGCATCCTTGTTCATGTTTAATTTGGAAAGAGCAACCGCCTGCATGTAAAACGCTGTGGACCAGTCCGGGTAGACACATTGAGCTTGCATGGCATCTCTGAGAGCAGCATCTGGTTGATCGCAGAAGAGATAGCAAAGACTTCTCCGTGCATAGACAGTTGGGGAAACCATGGTTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00661	90823	94493	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016020 membrane

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000661s00022623.1	PF00004.24	AAA	296	427	4.30E-44
Glyur000661s00022623.1	PF01434.13	Peptidase_M41	489	702	2.00E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.522
SRR1783600	control	31.828
SRR1783602	moderate drought stress	23.225
SRR1811619	moderate drought stress	22.984

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.209
DRR006520	Root Summer glycyrrhizin high producing strain	33.549
DRR006521	Root Winter glycyrrhizin high producing strain	43.556
DRR006522	Root Winter glycyrrhizin high producing strain	42.703
DRR006523	Root Summer glycyrrhizin low producing strain	35.224
DRR006524	Root Summer glycyrrhizin low producing strain	34.190
DRR006525	Leaf Summer glycyrrhizin high producing strain	458.389
DRR006526	Leaf Summer glycyrrhizin high producing strain	457.338

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.576
SRR2868004	Drought Stress (root)	46.778
SRR2967015	Control (root)	44.092

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	416.772
SRR9715740	Leaf	570.451
SRR9715741	Leaf	326.088
SRR9715739	Root	19.789
SRR9715742	Root	39.395
SRR9715743	Root	34.226

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.733
SRR8749028	MeJA induced 9h	60.025
SRR8749029	MeJA induced 9h	62.192
SRR8749030	Uninduced	45.953
SRR8749031	Uninduced	35.413
SRR8749032	Uninduced	36.854

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.621
SRR8400027	Control - Root	44.284