Gene detail information of Glyur000661s00022616 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76160.1 | 0 | SKU5 similar 5 |
| NR | KEH36280.1 | 0 | multi-copper oxidase-like protein [Medicago truncatula] |
| COG | YP_003290660.1 | 8.00E-14 | multicopper oxidase type 3 [Rhodothermus marinus DSM 4252] |
| Swissprot | tr|Q00624|ASOL_BRANA | 0 | L-ascorbate oxidase homolog (Precursor) |
| trEMBL | tr|A0A072VDP0|A0A072VDP0_MEDTR | 0 | Multi-copper oxidase-like protein {ECO:0000313|EMBL:KEH36280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00661 | 63676 | 70795 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000661s00022616.1 | PF07732.10 | Cu-oxidase_3 | 40 | 153 | 4.00E-34 |
| Glyur000661s00022616.1 | PF00394.17 | Cu-oxidase | 166 | 302 | 4.30E-42 |
| Glyur000661s00022616.1 | PF07731.9 | Cu-oxidase_2 | 378 | 514 | 6.00E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 212.970 |
| SRR1783600 | control | 213.927 |
| SRR1783602 | moderate drought stress | 69.566 |
| SRR1811619 | moderate drought stress | 69.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 80.101 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 79.681 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.540 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.229 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.701 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 115.979 |
| SRR2868004 | Drought Stress (root) | 33.943 |
| SRR2967015 | Control (root) | 41.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.372 |
| SRR9715740 | Leaf | 0.329 |
| SRR9715741 | Leaf | 8.515 |
| SRR9715739 | Root | 44.056 |
| SRR9715742 | Root | 32.950 |
| SRR9715743 | Root | 32.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.837 |
| SRR8749028 | MeJA induced 9h | 25.775 |
| SRR8749029 | MeJA induced 9h | 17.863 |
| SRR8749030 | Uninduced | 19.800 |
| SRR8749031 | Uninduced | 4.949 |
| SRR8749032 | Uninduced | 7.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 99.224 |
| SRR8400027 | Control - Root | 113.098 |