Gene detail

Gene detail information of Glyur000661s00022615

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76150.1	4.00E-114	enoyl-CoA hydratase 2
NR	AFK34726.1	0	unknown [Lotus japonicus]
COG	YP_552039.1	3.00E-58	MaoC-like dehydratase [Polaromonas sp. JS666]
Swissprot	tr\|Q8VYI3\|ECH2_ARATH	7.00E-168	Enoyl-CoA hydratase 2, peroxisomal
trEMBL	tr\|I3S384\|I3S384_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK34726.1}

Sequence

Transcript Sequence

>Glyur000661s00022615.1
CGCGGGTCCAAATTTCCAGTTCATTTTCTGCCCTCGGTGTGGAGATTAAGCACTACATGGCGGATGCATCGGAGTTCGACCCTGCGCTCGCACTTTCTCATAAGTTCCCTGATACCACGTACTCTTATACCGAAAGAGATGTAGCACTTTATGCCTTAGGCATAGGGGCNTGTGCATCGGATGCTGTTGATGCTGACGAGCTTAAATATGTTTACCATGAAAATGGTCAGCAGTTTATCAAGGTCTTGCCTACGTTTGCTGCTTTACTTACACTCGGATCCGTGCCCAGTACTTTTGATCTCCCGGGCTTGCAATATGATCCACTCCTTCTGCTGCATGGACAACAGTATATAGAGTTGTACAAACCATTTCCTTCCAGCTGTGATATACTCAATAAAGTCANTCTTGCTGGATTACATGATAAAGGCAAAGCAGCAATTTTGGAGATTGAAACAAAAAGTTACGAGAAAGAGTCTGGTGATTTATTATGCATGAACAGGACAACAGTCTATCTACGTGGTGCTGGTGGCTTCTCAAAGTCATCTAATCCATTTTCTTACTCAAATTACCCTNCGAACCAGGCTTCAGCTGTAAAAATTCCTGAAAGTCAACCTTTTTCAGTGTTCGAGGATCATACTCAACCATCTCAGGCATTGCTCTACAGGCTATCCGGTGACTACAATCCTCTGCATTCAGATCCCATGGTTGCAAAGGTTGCAGGATTCTCGCAGCCAATATTGCATGGGCTGTGCACATTAGGATTTGCAGTTAGGGCAATAATCAAAAACATATGCAGAGGAGACCCCGACATGATAAAAAGCATAGCGGGCCGTTTTCTTCTACATGTCTACCCTGGTGAAACTATTGTTACCGAGATGTGGCTTGATGGCCTGAGGGTTATTTATCGGACTATGGTGAAAGAGAGAAAGCGGACAGTCCTTTCTGGCTATGTTGTTCTGCGTGGTTTGACTTCGTCACTCTGAAGGGATTCAATTGCATGTAAGCTGGATAATATTTGTAATTGTAGAGGGTATATCATCAAGTTAGTTATGTTTCCAATAATGCCTAAATGCACTGAAGCTGATTTTTAAATGTAACTCTCTTTCATTTCATAAATGTTAAAAATGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00661	58716	62710	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000661s00022615.1	PF13452.1	MaoC_dehydrat_N	15	136	1.10E-06
Glyur000661s00022615.1	PF01575.14	MaoC_dehydratas	191	290	9.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.413
SRR1783600	control	26.159
SRR1783602	moderate drought stress	27.590
SRR1811619	moderate drought stress	27.625

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.271
DRR006520	Root Summer glycyrrhizin high producing strain	41.642
DRR006521	Root Winter glycyrrhizin high producing strain	37.017
DRR006522	Root Winter glycyrrhizin high producing strain	37.155
DRR006523	Root Summer glycyrrhizin low producing strain	31.364
DRR006524	Root Summer glycyrrhizin low producing strain	31.189
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.335
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.009

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.467
SRR2868004	Drought Stress (root)	55.905
SRR2967015	Control (root)	48.258

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.918
SRR9715740	Leaf	59.669
SRR9715741	Leaf	59.454
SRR9715739	Root	25.190
SRR9715742	Root	26.731
SRR9715743	Root	29.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	86.710
SRR8749028	MeJA induced 9h	73.908
SRR8749029	MeJA induced 9h	68.600
SRR8749030	Uninduced	179.154
SRR8749031	Uninduced	119.472
SRR8749032	Uninduced	128.902

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.919
SRR8400027	Control - Root	57.713