Gene detail

Gene detail information of Glyur000661s00022610.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17030.1	4.00E-17	F-box family protein with a domain of unknown function (DUF295)
NR	XP_004500900.1	8.41E-161	PREDICTED: F-box protein At2g26160-like [Cicer arietinum]
Swissprot	tr\|Q3EBZ2\|SKI23_ARATH	4.00E-22	F-box protein SKIP23
trEMBL	tr\|I1JSY2\|I1JSY2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G02200.1}

Sequence

Transcript Sequence

>Glyur000661s00022610.1
ATGGGGGTGGNCTGGGGTNAACTACCGCCAGAAATCGTAGAAACAATATCGAGAAAGCTAANTCTGTACGGCGATTACCTCCGATTCCGATGCGTATGTCGTAGCTGGCGATCCTCNGTCCCCGAAACCCCTCTCCATCATCTCCCACCCCAACTCCCACCACGCCTCCTCCTCCTCCTCCTCTCTCTTCCCCCTTCCCTCTTCAACCTCTCCACCAACAAGACCCACCTCCTCCCCAACACCAACCTCCCCTTCCTCTCTCGCATCTGCGGTTCCTCTCACGGCTGGCTCGTCACCCTCGACGATTCCCCANGCGTTCGCCTCCTCAACCCCATCACACGCGCCTCCCTCCCCCTTCCCCCTCTCCACACTTTCCCAAACGTCGTCGATTTTGACTATTCCAATATCGGTCGAGAGTATCTTGTTAGAAACCCTTACGGTGGTGGTGGCGGCGGCTTCGACGCTTTCAGTTTGAGGCAGATGTGTAACTCTTTTCTCAGAAAAGTTGTCCTCTCTTCCAGCCCCTCGCTCGGCGACGACTTCGCCGCGTTCGCCNTCGTGGGTCAACACAACTTGGCCTTCTGCAGAAAGGGCTACGATTCTTGGGTTTTCCTAATTGAAGAAGAAGAAGAAGAAGAAATGTACTATTGGGAAGACGCTGTGTATCGCAATGGGTTGTTTTTCGCGGTTAGCAAGGAAGGGGTAATTGCCGTGTGCGATGTTGGTGGTGGTTCGCCTCGTGTCTCCATTATTCAGACGACGGCGCCGGCGGGATTCTCCGGCGATATTCACTACGCGGCGTTTTCCCGGGAGGATTTGTTGCTTGTCACTCGGGTTCTGGAGCAGGAGTTTTCCGATGAATCGAACCTTGTGTATTGGACTGTGGGGTTCGAGGTTTTCAAGATGGATTGGGGTGTGCNGGCGTGGCAGAAAGTTGAGACCTTGGGTGACCGCGTGTTGTTTGTTGGGGGGAACTCTTCGCTTTCCTTTTCTGCTGCTGATTTTGAAGGGTGCTGTGCGGATTGCATCTATTTCACCGACGATTATTCGGAGTCTNATCACGATGATGATGCGTATGGGAAGCATGATTTGGGGATCTTTAGGTTATGGGATCAGAGCATTGAGCCGTTGCCCTGTTTTNCCCGAAGTTCTTCATATTCTCGATTGGGATGGCCGCTTCCAATTTGGGATATGCAGAGGATATAAAAGACTTCGGNATTTGTTGATGCAGCACATTTCCTTGCTTCTCTCGTGTATGCAGAAAATTTGGACAAAATAAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTCGGTTAGTGGTACTTATTTCCGTAGTTATGTATTAATCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00661	25375	27346	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000661s00022610.1	PF00646.28	F-box	7	46	0.00014
Glyur000661s00022610.1	PF03478.13	DUF295	309	364	1.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.684
SRR1783600	control	5.501
SRR1783602	moderate drought stress	10.406
SRR1811619	moderate drought stress	10.802

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.798
DRR006520	Root Summer glycyrrhizin high producing strain	9.259
DRR006521	Root Winter glycyrrhizin high producing strain	12.141
DRR006522	Root Winter glycyrrhizin high producing strain	12.166
DRR006523	Root Summer glycyrrhizin low producing strain	9.847
DRR006524	Root Summer glycyrrhizin low producing strain	10.989
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.645
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.247

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.237
SRR2868004	Drought Stress (root)	8.671
SRR2967015	Control (root)	10.042

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.423
SRR9715740	Leaf	15.374
SRR9715741	Leaf	15.551
SRR9715739	Root	8.720
SRR9715742	Root	8.039
SRR9715743	Root	8.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.538
SRR8749028	MeJA induced 9h	9.810
SRR8749029	MeJA induced 9h	10.464
SRR8749030	Uninduced	7.903
SRR8749031	Uninduced	11.995
SRR8749032	Uninduced	24.341

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.741
SRR8400027	Control - Root	7.707