Gene detail

Gene detail information of Glyur000661s00022609.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76110.1	4.00E-102	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
NR	XP_003523234.1	0	PREDICTED: high mobility group B protein 9-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SGS2\|HMGB9_ARATH	2.00E-126	High mobility group B protein 9
trEMBL	tr\|I1JSY3\|I1JSY3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G02210.1}

Sequence

Transcript Sequence

>Glyur000661s00022609.1
GCAGAAAAAAGCCAACAACGCTGCAGCGTAACCGTTCCCCCCCACGCGGCAAACCATCTTCTTTAATTCTCTCAGCTTTGGTCAGACTCACTCAGACTACTCTCACTCACTCAGCCTCGCCTTTCCTTAATTGCCATTCTCATTTTCTCATCTTGGAATTATCGTTCCTTTTTTTATATATTTTTTTTCCTTCCTATTTACTCTCGTCACATCAAAATATCTTTCTTCTGTTCCTGTCCTGCTATTCAAAAACACAACAACAACGGCACACCACCATTCTTCAACTTTCATTTCGCNCCAGTTAGTTAGATTTGCGGGCAGTACCGTTGACGCGAACGACTCGCCGTCGTCTCTGTGCTCGGAATGTCGTCGGTGGCGAGAAGCAACGGCTCCGGTGGTGGTGACNATGGCAAACACTACCCTCTCCCACTTGCCTCTCACAACGACGTCGTCTATGACCCCACTCTCTTCTGGGACACTCTCAGGCGCTTTCACTTTGTTATGGGCACCAAATTCATCGTGTTGGACATTTTTGCCCACGTCATCATCCCTAGGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTACACGTTCTTTACGTGGAGGTTACGAGGAGAAGTGGTTATGAGAAGGTGGTTGCGGAGAAGAAATGGAGGGAAGTGGGAAGCGTGTTCAGATTCTCAGCCACCACCACAAGCGCTTCTTTTGTGCTGAGGAAACATTACTTNAGTCTTCTTTATCATTATGAGCAAGTTCACTTCTTCAAAGTTCGTGGTCCTGTGTACACTCCTTCAGCTGACGCATTTTCTGGCAGCAGCCCTTCCTGGAAACCTGAATTAGCTATTGTTCAATATTCACCTAAGCCGTTAAACTATGGTCCTGAAAGTGAATCCCATGCTGAAGTGCTGCGCGTAGATAATTCATGTCTTCTGGGAACTGGAACGATCGAAGGAAAATTTGATTGTGGTTATATAGTGTCAGTGAAATTGGGTTCGGAGGTGCTGAAAGGAGTGCTCTACCATCCGGAGCAGCAATTGGTTCCTGGTTCACCATCGGTTCTGCAGCACGACAGTGCCATTGTACCATTCGATCGCAAATCTCGCCGCTCTAGTAGGAGGAGGAGGAGAAACAAAAGAAAGTGGGACCCCAACTATCCAAAGCCAAACAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACAAGCTCAAAGAGCTCTACCCCAACAGAGAAAGGGAATTTACCAAAATGATTGGCCAGTCCTGGAATAGTCTCAGCCCTGAAGAAAGAATGGTTTACCAGAACATTGGCTTAAGGGACAAAGAAAGGTACAAGAGAGAATTGACGGAGTACAAAGAGAAAATGAAGGTTAGGCAGAGCGAAGAACTTGGACGTCCATGAATCAGTGGTAGACTTTATGGCAGCGAAAGAATGGCTATATAATCTGTTGACTTTTAGTTTTGCATGCCTATTGTTGTGGATAATGGTCCACTGGACTGAGGTCCATACCGATGGCATTGGTCTGTCCTCCGTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00661	16486	19384	-

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000661s00022609.1	PF01388.16	ARID	34	129	1.10E-17
Glyur000661s00022609.1	PF00505.14	HMG_box	265	332	4.50E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.024
SRR1811619	moderate drought stress	0.023

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.140
DRR006520	Root Summer glycyrrhizin high producing strain	0.139
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.358
DRR006524	Root Summer glycyrrhizin low producing strain	0.325
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.273
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.179

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.190
SRR2868004	Drought Stress (root)	0.390
SRR2967015	Control (root)	0.393

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.825
SRR9715740	Leaf	22.310
SRR9715741	Leaf	6.998
SRR9715739	Root	0.046
SRR9715742	Root	0.542
SRR9715743	Root	0.496

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.104
SRR8749028	MeJA induced 9h	0.192
SRR8749029	MeJA induced 9h	0.219
SRR8749030	Uninduced	0.700
SRR8749031	Uninduced	0.124
SRR8749032	Uninduced	0.309

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.065
SRR8400027	Control - Root	0.253