Gene detail

Gene detail information of Glyur000660s00025405

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G33520.2	P-type ATP-ase 1
NR	XP_004504792.1	PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like [Cicer arietinum]
COG	YP_721315.1	heavy metal translocating P-type ATPase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9SZC9\|HMA6_ARATH	Copper-transporting ATPase PAA1, chloroplastic (Precursor)
trEMBL	tr\|A0A072UQ87\|A0A072UQ87_MEDTR	Copper-transporting ATPase PAA1, putative {ECO:0000313\|EMBL:KEH31223.1}

Sequence

Transcript Sequence

>Glyur000660s00025405.1
GCAAAGTCAATACCGAACGAAAGTAGAAAACTGGAAAACGCAATGCAGCGAAGTAAGGTAAAGCTACATAGCTAATAGCTATGTGCTCGACTGGATTACAGATATAGGATAGCCATAACCAGNGTGCGACTATTCTCCTCCTCAAATCCAATGGATTCTGCGTTCTCCGTCACCACGACGGCGCAGATGGTCCTATTCAGAGCGTTCCACCGCCATTTCGCCGGAGCTCCTCATCGCTCGCTCCTCCGCTGCAAGCTCAAATGCGTTGTTGCTTCTTCCTACAACAACCGCTTCCGCATTCCATGCTCCTCCGCCTCTTTCCCCTCTGCGCCGTTGTCGACCCCGCTCCACACCTTCCNCGCGCTGCTCTCACGAACGCNGTGCCGCACGCGCTGCATTTCGAGCTCCGCCGCTTCTTTTGCTTCTTCCGCCGGCGGTGGGAACGACGGCGCTGGAGCCGGCTATGGCGGAGGAGGAGGTGGTGGTTCTGGCGGTGAGTCTGGAGATGCTAATCTCAAATTGGTTGGAGACACAGCTAAGGAGCTTTCGGCTCTCTCGCCTGATGTTATAATTCTTGATGTTTCGGGAATGGTGTGTGGGGGATGTGCAGCGACTGTGAAAAGGATTCTGGAAAGTCAACCACAAGTGTCNTGTGCAAGTGTAAATTTAACAACAGAGACAGCAATAGTTTGGCCTGTATCTGAAGCAAAAACTGCTCCAAATTGGCAAAAGCAATTAGGGAAGACACTTGCTGAGCATTTAACAAGCTGTGGTTTCAATTCTAACCTTCGAGATTCAACAAGAGAAAATTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGGCATAGACAATTAAGAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTTTGTGCTGTCTGTCTTGTTGGCCATGTCTCTCATTTCTTTGCAGCAAAGGCGCCATGGGTCCATGCTTTTCATTCTATCGGATTTCATCTATCGTTGTCTTTGTTTACATTACTTGGTCCTGGCCGCCAACTTATCCTTGATGGCTTAAAAAGCCTTTTTAAAAGGGCACCGAATATGAACACCTTAGTTGGTCTTGGGGCTTTATCATCATTTGCAGTCAGTTCATTTGCTGTGTTGCTACCAAAATTGGGTTGGAAGGCCTTTTTTGAGGAACCTATTATGCTTATTGCATTTGTCTTGTTAGGAAGGAATCTTGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAACATGTTGCCATCTAAAGCTCGCCTTCTAGTTAACAATGAGGAAACAGAGGTTCCCTCAGTTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGAAGACCAAATTATCGTATTACCTGGAGATTGTATTCCAGCTGATGGAATTGTGAGAGCTGGTAGAAGCACTGTAGACGAGTCAAGTTTCACTGGGGAGCCACTGCCAGTAACAAAAGTAGCTGGGAGTGAGGTTGCAGCTGGAAGTATAAATCTTAATGGAAGTATTACGATTGAGGTGCGGAGACCAGGTGGTGAGACTGCTATCGGAGACATTGTTCGTCTAGTTGAAGAGGCACAAAGTAGGGAAGCTCCTGTACAGCGGTTGGCTGACAAGGTGGCAGGATACTTCACTTATGGAGTAATGGCAGTCTCTGTTACAACATTTACATTTTGGAGTCTGTTTGGTACACACATTTTACCTGCTGCTGTATATCAAGGAAGTGCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGTGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGGGCTAAAAGAGGACTACTTTTGCGTGGTGGAAACATTCTAGAAAAGTTTGCCATGGTAAACACTGTTGTGTTTGACAAAACTGGGACCCTCACGGTTGAAAATGCTTTATCTGATGTTGAAGTTCTGAGATTAGCAGCTGCCGTAGAATCAAATTCAGTACATCCAGTTGGGAAAGCAATTGTTGATGCTGCTCAGGCAGCTAACTGTCATGGCGCTAAGGTAGCAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCAGTTGCAACCATTGATAACAAAACAGTTTCTGTTGGGACATTGGAATGGATAAGCAGGCATGGAGTTAACAACAGTATACATCAAGAAGTGGAGTGTGAAAACCAATCCTTTGTCTATGTTGGAGTTAATGATACTCTGGCTGGCCTAATTTATTTTGAAGATGAGATAAGGGAAGATGCAAGACATGTTGTTGACACATTGTCTAAGCAAGATATTGGTGTATACATGCTGTCTGGAGACAAAAGGAATGCAGCTGAGTATGTTGCATCTCTTNTTGGGATTCCCAAAGAGAAGGTGCTATCTGGAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTTCAGAAAGATAAGAGCGTTGTAGCTATGGTTGGTGATGGAATAAACGATGCAGCTGCCCTGGCTTCTTCACATATAGGTATTGCATTGGGTGGAGGTGTTGGAGCTGCTANTGAGGTGTCTTCTATCGTATTGATGCACAACCATCTCTCACAGCTACTTGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACTGTAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGAATTCCAATTGCAGCTGGGGTGTTATATCCCGTAAATGGTACCATCCTGACTCCATCAATTGCAGGGGCTCTCATGGGGTTCAGTTCCATTGGCGTGATGACAAACTCATTGCTTTTGAGATTCAAATTTTCCTTAAAGCAAAAACAAATACATGGCACATTGCCAAAGACCAAAACCCATGTCGAATCTGATCCGGCGCGCAAAAAACAGAAAATAAAGTATCCATATTAAATGTTGGATGGAGGCACACAACAGAAACGAGGTTCCACAAGTCCTGATCTCAGGTCAGGTAGAGCACGACTGGGGGATACACTTCTACCCTTTGTTCTTGTGGTGATCGTCTGAGGGATGAAAAGAAATCGGTATTAATGAGAAATCGGATGTATAGAAATGATAAGAGTCACACCGTCAATGGAATGGGAACATTAATCGAGAAATTGATGTGATGTGAAAGAATAAGTTAGATTAGTTATTTTGTCGGATTTCTCCAAGATACTTCTTTTTTATTCTCGTAGGTTTCTCTTTAGGAGCTCTGTAGCCGTCTTAATCACAAGCTTTCCTCCATAAGTAGCAGCTTTCCACCGATGACAGGTCCATTTATGCATTGGTCTTCTCCATTTCGAAGCATTGTGTTTGTGTCATGTTTTGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00660	104692	119276	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0030001 metal ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0019829 cation-transporting ATPase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000660s00025405.1	PF00403.21	HMA	142	198	4.40E-09
Glyur000660s00025405.1	PF00122.15	E1-E2_ATPase	343	579	1.20E-48
Glyur000660s00025405.1	PF00702.21	Hydrolase	584	789	1.10E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.127
SRR1783600	control	16.162
SRR1783602	moderate drought stress	13.754
SRR1811619	moderate drought stress	13.641

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.350
DRR006520	Root Summer glycyrrhizin high producing strain	10.223
DRR006521	Root Winter glycyrrhizin high producing strain	7.127
DRR006522	Root Winter glycyrrhizin high producing strain	6.851
DRR006523	Root Summer glycyrrhizin low producing strain	9.468
DRR006524	Root Summer glycyrrhizin low producing strain	9.173
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.302
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.499

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.465
SRR2868004	Drought Stress (root)	35.585
SRR2967015	Control (root)	40.879

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.831
SRR9715740	Leaf	24.176
SRR9715741	Leaf	33.486
SRR9715739	Root	3.343
SRR9715742	Root	14.330
SRR9715743	Root	12.177

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.997
SRR8749028	MeJA induced 9h	37.064
SRR8749029	MeJA induced 9h	38.035
SRR8749030	Uninduced	90.632
SRR8749031	Uninduced	94.718
SRR8749032	Uninduced	104.675

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.910
SRR8400027	Control - Root	19.202