Gene detail information of Glyur000660s00025404 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64210.1 | 1.00E-130 | alternative oxidase 2 |
| NR | AGQ42775.1 | 0 | mitochondrial alternative oxidase 2a [Medicago sativa] |
| COG | YP_002262194.1 | 2.00E-63 | hypothetical protein VSAL_I0677 [Aliivibrio salmonicida LFI1238] |
| Swissprot | tr|Q41266|AOX2_SOYBN | 0 | Ubiquinol oxidase 2, mitochondrial (Precursor) |
| trEMBL | tr|S5FDW5|S5FDW5_MEDSA | 0 | Ubiquinol oxidase {ECO:0000256|RuleBase:RU003779} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00660 | 95074 | 103032 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000660s00025404.1 | PF01786.12 | AOX | 87 | 293 | 5.60E-77 |
| Glyur000660s00025404.1 | PF01786.12 | AOX | 533 | 726 | 3.90E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.554 |
| SRR1783600 | control | 7.618 |
| SRR1783602 | moderate drought stress | 11.609 |
| SRR1811619 | moderate drought stress | 11.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.087 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.885 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.878 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 75.767 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 75.502 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 44.763 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 44.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 52.660 |
| SRR2868004 | Drought Stress (root) | 89.494 |
| SRR2967015 | Control (root) | 56.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 155.492 |
| SRR9715740 | Leaf | 147.812 |
| SRR9715741 | Leaf | 279.238 |
| SRR9715739 | Root | 16.086 |
| SRR9715742 | Root | 61.405 |
| SRR9715743 | Root | 49.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.717 |
| SRR8749028 | MeJA induced 9h | 86.444 |
| SRR8749029 | MeJA induced 9h | 60.255 |
| SRR8749030 | Uninduced | 120.305 |
| SRR8749031 | Uninduced | 211.130 |
| SRR8749032 | Uninduced | 103.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.726 |
| SRR8400027 | Control - Root | 49.565 |