Gene detail

Gene detail information of Glyur000660s00025397.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12110.1	3.00E-138	sterol-4alpha-methyl oxidase 1-1
NR	XP_004515763.1	0	PREDICTED: methylsterol monooxygenase 1-1-like [Cicer arietinum]
COG	YP_004449996.1	4.00E-09	fatty acid hydroxylase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q8L7W5\|SMO11_ARATH	6.00E-174	Methylsterol monooxygenase 1-1
trEMBL	tr\|G7JK82\|G7JK82_MEDTR	0	Sterol C4-methyl oxidase 1-2 {ECO:0000313\|EMBL:AES90994.1}

Sequence

Transcript Sequence

>Glyur000660s00025397.1
TGCTCTCTCAGAGTTTGTAGTCATTTCTGTACATTTATGTGGTATTTCATTTCATCAATGTACAGAATGGTGGTTCCAAAAGAAGGCAGATGTTGAAAAAGACAAAGGCCTATAAATAACTGGCCTTTGGCATTTTGAAAATTCCCGCAATTATTTGTAACAGACAAACAAACAATCCAGCGCAGCATCCCACCACGTCTTCTTTCTCTCCATATTATACCGAATCTGCTGTGCTGTCACTCCCTCCGCCGCCGGCACTGCTACCACCTGGCTAGGGTTCCACTCCGGCGACGATGATTCCCTACCACTCCCTTCAGGAAGCCGAGGCGGCGCTGGGTCGAANCCTCACCTTCGCTGAGACACTCTGGTTCAACTACTCCGCCACCAAGTCCGANTACTTCCTCTATTGCCACAACATTCTGTTCCTCTTCCTCATCTTCTCCCTCGTCCCTCTCCCACTCGTGTTCCTCGAGGTGAAGCGCCTCTCCCCCTTCGACTCCTACAAGATCCAGCCCAAGGTTCGACTCTCCCTCCACGAGATGCTCAACTGCTACAAGGACGTCATGCGCATGTTCTTCCTCGTCGTTGGTCCCCTCCAGCTCGTCTCATACCCTTCCGTCAAGATGATTGGGATCAGGACGGGGTTGCCATTGCCGTCAGGGTGGGAGATCCTGGCGCAATTGGCGGTGTATTTCGTTGTCGAGGATTACACCAATTACTGGATCCACAGGTTTCTGCACAACAAGTGGGGTTACGACAAGATTCATCGCGTTCACCATGAATACCAGGCTCCGATTGGGTACGCCGCGCCCTACGCTCACTGGGCTGAGATCTTGATCCTCGGGATTCCGTCGTTTCTAGGGCCGGCTATGGTTCCTGGTCACATGATTACGTTTTGGTTGTGGATAGCATTGCGCCAGATTGAGGCCATTGACACGCACAGCGGGTATGACTTCCCCTGGAATCCCACAAAATACATTCCATTTTATGGTGGCGCTGAGTATCATGATTACCATCATTACGTTGGGGGACAAAGCCAAAGCAACTTTGCTTCAGTTTTCACATACTGTGATTACCTCTATGGAACTGACAAGGGTTATAGGTATCAGAAGAAGATACTTCGTAAGTTGAAGGAAGAGTTGACAAATGGCGCTGAGCAAAACGGAGGATCATACAAGACACAGGATAAAAAATCTGAGTGAGAGACAGAAGCATCGTAGGTGGTTTCAGTGCATGTGGCATGTTGACCCTTAGAAACTACCAAATTTCTTGTAGAAATATATCTCCTGATGGTAAAATAGATGTCTTTGGTTAGCTTCAGGGTGGAGACTNGTAGAAGGGGGTTTTACGAATTGTGTTTTTGTTTTAGCAGAGGGGGCGAGGGAGGAATTCCTTCTGTTGTCATATTTTGGAATCCAAACATTTGGTTTTGCTTCATGTCTANGCCAGAAATCTGAATGATCCTTTCCCTGTGGGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00660	54895	57988	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14423	SMO1	EC:1.14.13.72	Steroid biosynthesis	map00100

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000660s00025397.1	PF04116.8	FA_hydroxylase	131	243	5.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	70.525
SRR1783600	control	71.082
SRR1783602	moderate drought stress	88.131
SRR1811619	moderate drought stress	87.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.033
DRR006520	Root Summer glycyrrhizin high producing strain	46.028
DRR006521	Root Winter glycyrrhizin high producing strain	42.775
DRR006522	Root Winter glycyrrhizin high producing strain	41.565
DRR006523	Root Summer glycyrrhizin low producing strain	36.101
DRR006524	Root Summer glycyrrhizin low producing strain	36.481
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.649
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.683

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.077
SRR2868004	Drought Stress (root)	33.144
SRR2967015	Control (root)	43.675

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.440
SRR9715740	Leaf	9.784
SRR9715741	Leaf	15.632
SRR9715739	Root	43.669
SRR9715742	Root	43.995
SRR9715743	Root	39.719

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.414
SRR8749028	MeJA induced 9h	20.458
SRR8749029	MeJA induced 9h	18.219
SRR8749030	Uninduced	11.880
SRR8749031	Uninduced	8.364
SRR8749032	Uninduced	9.623

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	71.719
SRR8400027	Control - Root	65.177