Gene detail information of Glyur000660s00025393 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12080.1 | 2.00E-59 | AT-hook motif nuclear-localized protein 1 |
| NR | XP_003525779.1 | 2.79E-180 | PREDICTED: uncharacterized protein LOC100801730 [Glycine max] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 1.00E-07 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|I1K0I8|I1K0I8_SOYBN | 1.00E-180 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G04040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00660 | 30817 | 35711 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000660s00025393.1 | PF02178.14 | AT_hook | 71 | 82 | 0.016 |
| Glyur000660s00025393.1 | PF03479.10 | DUF296 | 144 | 260 | 1.50E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.168 |
| SRR1783600 | control | 8.994 |
| SRR1783602 | moderate drought stress | 8.133 |
| SRR1811619 | moderate drought stress | 8.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.123 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.120 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.619 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.713 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.333 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.132 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.208 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.598 |
| SRR2868004 | Drought Stress (root) | 51.046 |
| SRR2967015 | Control (root) | 52.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.249 |
| SRR9715740 | Leaf | 4.517 |
| SRR9715741 | Leaf | 5.331 |
| SRR9715739 | Root | 39.414 |
| SRR9715742 | Root | 28.919 |
| SRR9715743 | Root | 30.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.005 |
| SRR8749028 | MeJA induced 9h | 36.870 |
| SRR8749029 | MeJA induced 9h | 33.628 |
| SRR8749030 | Uninduced | 26.628 |
| SRR8749031 | Uninduced | 11.049 |
| SRR8749032 | Uninduced | 12.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.734 |
| SRR8400027 | Control - Root | 27.307 |