Gene detail information of Glyur000659s00029689.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46030.1 | 1.00E-30 | |
| NR | AFK36895.1 | 3.35E-55 | unknown [Medicago truncatula] |
| Swissprot | tr|Q8LHP0|ELOF1_ORYSJ | 2.00E-53 | Transcription elongation factor 1 homolog |
| trEMBL | tr|I3S9F3|I3S9F3_MEDTR | 1.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:AFK36895.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00659 | 122822 | 125169 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000659s00029689.1 | PF05129.8 | Elf1 | 2 | 81 | 7.30E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 184.145 |
| SRR1783600 | control | 179.744 |
| SRR1783602 | moderate drought stress | 238.059 |
| SRR1811619 | moderate drought stress | 236.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 560.922 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 548.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1050.936 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1011.698 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 453.951 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 455.564 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 159.889 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 157.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 292.396 |
| SRR2868004 | Drought Stress (root) | 296.775 |
| SRR2967015 | Control (root) | 299.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 224.138 |
| SRR9715740 | Leaf | 250.179 |
| SRR9715741 | Leaf | 312.434 |
| SRR9715739 | Root | 309.615 |
| SRR9715742 | Root | 307.725 |
| SRR9715743 | Root | 307.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 281.717 |
| SRR8749028 | MeJA induced 9h | 258.878 |
| SRR8749029 | MeJA induced 9h | 314.421 |
| SRR8749030 | Uninduced | 300.658 |
| SRR8749031 | Uninduced | 278.642 |
| SRR8749032 | Uninduced | 322.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 387.790 |
| SRR8400027 | Control - Root | 326.809 |