Gene detail

Gene detail information of Glyur000659s00029682.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10430.1	3.00E-175	protein phosphatase 2A-2
NR	XP_003628600.1	0	Serine/threonine protein phosphatase [Medicago truncatula]
COG	YP_001541554.1	2.00E-36	metallophosphoesterase [Caldivirga maquilingensis IC-167]
Swissprot	tr\|Q9ZSE4\|PP2A_HEVBR	0	Serine/threonine-protein phosphatase PP2A catalytic subunit
trEMBL	tr\|G7LEN1\|G7LEN1_MEDTR	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}

Sequence

Transcript Sequence

>Glyur000659s00029682.1
GTTTCACTGAGAAGCACAAAACTGAAGAGAACGTAGAGAAAGAAAAAAAACGGGGGGAAATGATTGAGAGACCAAACCCAATAGCGCCATCTTCAAAACGGTGCGTTTTGTTCTCCGCGTTCAGCTTCCGAACCTAACCCTAACCCCGGCATTTCTCCGGTCGCCGCCGACGACGCTCCGTTCGAGCCACACACGACCCAGGCAGAAATCGATCGATTCCATCGATTCGTCGTTTCGCTCTGTTCTCTCCGCAAAAGATCAAATCGAAGTGAGGTCTTGAGGAAGGTGTTTGGATTGGATCATTGAAACGATGCCGTCTCAAGCGGATCTGGACCGTCAAATCGAGCACCTGATGGAGTGCAAGCCTCTGCCGGAATCTGAGGTGAAGGCGCTGTGCGATCAAGCGAGGGCGATTCTGGTGGAGGAGTGGAACGTGCAACCGGTGAAGTGCCCCGTCACCGTTTGCGGCGACATTCACGGCCAGTTCTACGATCTCATTGAATTGTTTCGGATAGGAGGGAATGCCCCTCATACCAATTACCTCTTTATGGGTGATTATGTAGATCGTGGATATTATTCAGTTGAGTCTGTTTCGCTTCTGGTGGCCTTGAAAGTCCGTTACAGAGATAGAATTACAATTCTCAGGGGAAATCATGAAACCCGTCAAATTACTCAAGTGTATGGCTTCTATGATGAATGCTTGAGAAAATACGGAAATGCCAATGTCTGGAAATACTTTACTGACTTGTTTGATTATTTACCTCTGACTGCCCTTATTGAGAGTCAGATATTCTGCTTGCATGGAGGTCTCTCACCTTCCTTGGATACACTGGATAATGTCAGAGCATTGGATCGTATACAAGAGGTTCCCCATGAAGGACCAATGTGTGATCTCTTGTGGTCTGATCCTGATGATCGCTGTGGATGGGGAATATCTCCACGTGGTGCTGGATACACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTCTCCCTGATATCTAGAGCTCACCAGCTTGTTATGGAAGGATACAATTGGTGCCAGGAGAAGAATGTCGTCACTGTATTTAGTGCTCCGAATTACTGTTACCGATGCGGGAATATGGCCGCCATACTGGAAATTGGAGAGAACATGGATCAGAATTTTCTTCAGTTTGATCCAGCTCCCAGGCAAATTGAGCCAGACACAACACGCAAGACTCCAGATTATTTTTTATAACTTCATATATCTGCCTGTTTCTAGTTACTGCTTTCTGCCCTTACTCTAGATGTCTCTTTAAGGAAAGAGGAGTTTCACTGTTTAAGTGGAAGGTGGTCATCAACATAATTCTTTCTTTTGGAGTTTTCCTACTGCTGCCGCTGCCGCTGCCTTATTTGCAAGAAACCAATAGAGAACTGACCCAAGCCACCAATTGGTGTTTGTATATTTTTTGAGAGGAGGAAGTGGCAATAACAGGGTATATCTTGTTCTTGTTCTGTGATTTTTTTTTAATTAAATCTCAAGTTAGAGAGCATATTTTTTGAGTCGCGACAATGATGTTCATTTGAGATTTTTGATGGTGCTGAATGAAAGTGCAGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00659	83039	87563	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04382	PPP2C	EC:3.1.3.16	mRNA surveillance pathway	map03015
			MAPK signaling pathway - fly	map04013
			TGF-beta signaling pathway	map04350
			Hippo signaling pathway	map04390
			Hippo signaling pathway -fly	map04391
			Sphingolipid signaling pathway	map04071
			PI3K-Akt signaling pathway	map04151
			AMPK signaling pathway	map04152
			Autophagy - animal	map04140
			Autophagy - yeast	map04138
			Cell cycle - yeast	map04111
			Meiosis - yeast	map04113
			Oocyte meiosis	map04114
			Tight junction	map04530
			Adrenergic signaling in cardiomyocytes	map04261
			Dopaminergic synapse	map04728
			Long-term depression	map04730
			Hepatitis C	map05160
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000659s00029682.1	PF00149.23	Metallophos	48	240	3.20E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.844
SRR1783600	control	18.077
SRR1783602	moderate drought stress	13.205
SRR1811619	moderate drought stress	13.176

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.945
DRR006520	Root Summer glycyrrhizin high producing strain	21.675
DRR006521	Root Winter glycyrrhizin high producing strain	20.074
DRR006522	Root Winter glycyrrhizin high producing strain	19.515
DRR006523	Root Summer glycyrrhizin low producing strain	21.404
DRR006524	Root Summer glycyrrhizin low producing strain	22.636
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.081
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.927

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.873
SRR2868004	Drought Stress (root)	31.105
SRR2967015	Control (root)	29.403

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.103
SRR9715740	Leaf	16.349
SRR9715741	Leaf	19.966
SRR9715739	Root	11.740
SRR9715742	Root	19.460
SRR9715743	Root	17.772

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.634
SRR8749028	MeJA induced 9h	19.570
SRR8749029	MeJA induced 9h	19.598
SRR8749030	Uninduced	23.557
SRR8749031	Uninduced	22.804
SRR8749032	Uninduced	19.620

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.078
SRR8400027	Control - Root	32.130