Gene detail

Gene detail information of Glyur000658s00024849

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37010.1	0	non-intrinsic ABC protein 12
NR	XP_004497522.1	0	PREDICTED: putative white-brown complex homolog protein 30-like [Cicer arietinum]
COG	YP_001517187.1	4.00E-38	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9SJK6\|WBC30_ARATH	0	Putative white-brown complex homolog protein 30
trEMBL	tr\|K7LHN8\|K7LHN8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G06550.2}

Sequence

Transcript Sequence

>Glyur000658s00024849.1
ATGAAGAAATTACCTTTCACTCCTTCTTCCTCAAACTCCATCCACCCATCATCCCCTTCAACCTCAACCTCCATCATTCTCTTCCTCAAAGGATGCTTGATTCGATGGTCGCCTCCAAATTATGGAAATGAGGAACTATGTCGACATCGTCATCTTCACTTTTGCCCCTCCTTCTACACCGAAGAAATCTATAAGGAGCTCCAAAATCTTGCCACCCTTTTAAACAAGGACATTAAATCAAGTTTAGGCTTTTGCATTAACGACGTGAACTATGTCGACATCGTCATCTTGTTCTTCTGTTTCCTCTCTTTAGCTCTGCCACCAAGGATTCAATGTGCCGATAGCACTTTTGCCCCCTCCTTCTACACCGAAGAAATCTATAAGGAGCTCCAAAATCTTGCCACCCTTTTAAACAAGGACATTAAATCAAGAAAAAAGATTGGGAGGAGGCCTTTGATTTTACGGGAAAGAGATTTCAGAGACCGTATATGTACTGCAGCAGAAATAAGGTACTACTTCCATGGTTTCATGGAACAGGCAGCATCATCTGCCAATTATGTAAAACCTAACAAGAATTGCAATTTGACCTCATGGGTTTCTGGTTGTGAACCTGGTTGGAGTTGTAGTGCGGGCAAGAGTACTATTGACCTCAAAAAGGACATAAAGGACATTCCTTATAGAACCAAGAACTGTCAACCTTGTTGNGAGGGGTTTTTCTGCCCTCAAGGATTAACTTGCATGATACCATGCCCACTAGGCTCTTATTGTCCACTTGCAAAACTNAACAATGCGACTGGAATATGTGACCCATATAGTTACCAGATACCTCAGGGAGAACCAAATCATACTTGTGGCAGTGCTGATATTTGGTCTGGCGTGGTGAACAATAGTGATATATTTTGTTCTCCAGGATCATATTGCCCAACTACAACACGTAAAGTTTCTTGTGACAGTGGATATTACTGCAGGATGGGTTCTACTCACCAAAATCCATGCTCCAAATTGAGTACATGCAATCCAAACACAACAACCCAAAATATGCATGCTTATGGCGCTTTGCTTATTGTTGCATTGAGTACTCTNCTGATCTTCATATATAATTGTTCTGATCAAGTTCTAGCTACACGAGAAAGAAGGAAGGCTAAATCCAGGGAAGCTGCAGCAAGACAAGTAAGAGAAACTGTACAAGCTCGAGAAAGNTGGAAAATAGCAAAAGATGCTGCCAAAAGGAATAGGCCGGGATTNCAAGAGCAGTTATCCCGAACCTTTTCTCGCAGAAAATCAGTAAGGCAAGCAGAGCAATCAAAGGTTTTTAATCAAGCTAAACCTGCTGCAGGCAACACACTTTTGCCACCAATGCCTCAAGATTCCTCAAGCACANCTGAAGGCACAAAAGCCCAAAAAAAGGAACCTAGCAACCTTACTAAAATGTTGAATTCCCTCGATAGTGACCCTAACAGCAATGAAGGATTCAATCTGCAGATTGGAGACAAAAATATTAAAAAGCAGATGCCAAAGGGAAAACAGTTACATACNCAAAGTCAAATTTTGAGGTATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAACAAAACAAGAACTTGACCTTCTCTGGAGTGATTTCAATGGCTAGTGAAGGTGATGACGTTGTAACCAGGCCTGTGATTGAGGTAGCTTTCAAAGATTTAACCCTCACTTTGAAAGGGAAAAAAAAACATCTACTGAGGTGCGTGACAGGTAAAATCATGCCTGGTCGAGTNTCAGCTGTGATGGGTCCCTCAGGAGCAGGCAAAACTACATTTCTTTCTGCCCTGGCAGGGAAAATAAGAGGATGCACTATCACAGGCTCAATTCTAGTAAATGGAAAACCTGAATCCATTCACTGTTATCAGAAAATTATTGGTTTTGTNCCACAAGATGATATTGTGCATGGGAATTTGACAGTGGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGACTGTCTGCTGACATGCCAAAACCAGATAAAGTTCTNATTGTTGAAAGAGTAATTGAGTCCTTGGGACTCCAAGCAGTGAGGGATTCCCTTGTTGGGACGGTAGAGAAGCGGGGTATATCTGGAGGGCAACGAAAACGTGTAAATGTCGGGATGGAGATGGTTATGGAGCCTTCNTTGTTAATCTTAGACGAGCCTACAACTGGTTTGGACAGTGCATCTTCCACTTTACTACTTAAAGCACTTCGCCGTGAAGCTCTTGAAGGGGTAAACATCTGCATGGTACTTCACCAACCAAGCTACACTTTGTTCAGAATGTTTGATGATATAATATTTCTAGCGAAAGGTGGCCTTACTGCATATCACGGTCCTGTTAAAAAAGTNGAAGAATACTTTGCTGGCATTGGAATCGCTGTGCCTGATCGTGTGAATCCTCCAGACCATTTCATTGACATTCTGGAAGGTTTAGTGAAACCAACTACAGGTGTGACTTACCAACAACTTCCTGTCAGATGGATGCTTCATAATGGTTACCCAATACCACCAGATATGCTTCATTATGCTGATGAAATTTCTGTTTCATCATCTCCCTCAAATACAAAGGATGCAATAAAGGGTGTTGATGAAGCTACTGATCAATCATTTGCCGGAGAGTTTTGGGAGGATATGAAGAGTAATGTTCAAATCCACCGAGATCATATAGAGGCAACCTTCTTAAAGACNAAGGACTTATCTAACCGAAGAACTCCTGGGGTAGCTCGACAATATAGATACTACCTTGGGCGGGTTGGTAAGCAGATGTTGCGAGAAGCAAAAACACANGCAGTTGACTATCTCCTTTTATTAGTTGCTGGTGCTATCTTAGGAACTCTTACTAAAGTAAATGANGAAACATTTGGGTCTCTTGGATATACGTATACTGTTATTGCTATTGCNGCTCTCAGATCATTTTCTCTAGATAAATTACAATACTGGAGGGAGAGTGCATCCGGGATCAGCAGTCTGGCNCATTTTTTGGCCAAAGATACAATTGATCTTTTCAATACAATCATCAAACCTGTTGTTTATCTGTCCATGTTCTATTTTTTTAGCAATCCAAGGTCAAGCTTCGGAAGTAATTATCTGGTTTTGCTCTGCCTTGTATACTGTGTGACTGGCATGGCTTATGCATTAGCAATTTATTTCGAGCCAGCTCCAGCTCAACTGTGGTCAGTGCTTCTCCCTGTTGTTATGACTCTCATTGCGAACCAGAAAAGAGATACTACNCTTATGAAGATCCTAGTAAAAATGTGCTACCCAAATTGGGCTCTGGAGGCCTTTATCATTGCAAATGCTGAAAGGTACACTGGGGTATGGCTGATAACTCGCTGTAGTTCGCTNATGGGTAGCGGTTATAACGTCGATGATTGGCCTATTTGTCTGNCTGTCCTCATTTTTTATGGTATAGTTGCCCGAGTTGTGGCCTACTTGTGTCTGGTGATTACCCAAAAGAAGACCCACATAAATGTGTCGGTGCCTAAGGTAGTATTGCCGAGAGAGAATAAGGAGAGCTGTGACATTAAAGATAAATGTGGAGAGATGAGAAAGACGAAGAGTCGTACGACAAAGAAAGAGGAGAAAATGGAGGAAGTGACG

Protein Sequence

>Glyur000658s00024849.1
MKKLPFTPSSSNSIHPSSPSTSTSIILFLKGCLIRWSPPNYGNEELCRHRHLHFCPSFYTEEIYKELQNLATLLNKDIKSSLGFCINDVNYVDIVILFFCFLSLALPPRIQCADSTFAPSFYTEEIYKELQNLATLLNKDIKSRKKIGRRPLILRERDFRDRICTAAEIRYYFHGFMEQAASSANYVKPNKNCNLTSWVSGCEPGWSCSAGKSTIDLKKDIKDIPYRTKNCQPCXEGFFCPQGLTCMIPCPLGSYCPLAKLNNATGICDPYSYQIPQGEPNHTCGSADIWSGVVNNSDIFCSPGSYCPTTTRKVSCDSGYYCRMGSTHQNPCSKLSTCNPNTTTQNMHAYGALLIVALSTLLIFIYNCSDQVLATRERRKAKSREAAARQVRETVQAREXWKIAKDAAKRNRPGXQEQLSRTFSRRKSVRQAEQSKVFNQAKPAAGNTLLPPMPQDSSSTXEGTKAQKKEPSNLTKMLNSLDSDPNSNEGFNLQIGDKNIKKQMPKGKQLHTQSQILRYAYGQIEKEKAQQNKNLTFSGVISMASEGDDVVTRPVIEVAFKDLTLTLKGKKKHLLRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKIRGCTITGSILVNGKPESIHCYQKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADMPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFAGIGIAVPDRVNPPDHFIDILEGLVKPTTGVTYQQLPVRWMLHNGYPIPPDMLHYADEISVSSSPSNTKDAIKGVDEATDQSFAGEFWEDMKSNVQIHRDHIEATFLKTKDLSNRRTPGVARQYRYYLGRVGKQMLREAKTXAVDYLLLLVAGAILGTLTKVNXETFGSLGYTYTVIAIAALRSFSLDKLQYWRESASGISSLAHFLAKDTIDLFNTIIKPVVYLSMFYFFSNPRSSFGSNYLVLLCLVYCVTGMAYALAIYFEPAPAQLWSVLLPVVMTLIANQKRDTTLMKILVKMCYPNWALEAFIIANAERYTGVWLITRCSSLMGSGYNVDDWPICLXVLIFYGIVARVVAYLCLVITQKKTHINVSVPKVVLPRENKESCDIKDKCGEMRKTKSRTTKKEEKMEEVT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00658	81784	108437	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000658s00024849.1	PF00005.22	ABC_tran	578	726	1.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.404
SRR1783600	control	1.441
SRR1783602	moderate drought stress	3.398
SRR1811619	moderate drought stress	3.398

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.552
DRR006520	Root Summer glycyrrhizin high producing strain	2.658
DRR006521	Root Winter glycyrrhizin high producing strain	2.279
DRR006522	Root Winter glycyrrhizin high producing strain	2.231
DRR006523	Root Summer glycyrrhizin low producing strain	2.009
DRR006524	Root Summer glycyrrhizin low producing strain	2.026
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.173
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.168

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.440
SRR2868004	Drought Stress (root)	4.690
SRR2967015	Control (root)	6.003

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.319
SRR9715740	Leaf	2.046
SRR9715741	Leaf	3.633
SRR9715739	Root	0.412
SRR9715742	Root	1.609
SRR9715743	Root	1.870

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.489
SRR8749028	MeJA induced 9h	0.724
SRR8749029	MeJA induced 9h	0.385
SRR8749030	Uninduced	0.700
SRR8749031	Uninduced	0.089
SRR8749032	Uninduced	0.179

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.407
SRR8400027	Control - Root	3.809