Gene detail

Gene detail information of Glyur000658s00024842

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36990.1	1.00E-142	RNApolymerase sigma-subunit F
NR	XP_007144359.1	0	hypothetical protein PHAVU_007G149600g [Phaseolus vulgaris]
COG	YP_007170015.1	1.00E-75	RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC 7418]
Swissprot	tr\|Q9LD95\|SIGF_ARATH	4.00E-172	RNA polymerase sigma factor sigF, chloroplastic (Precursor)
trEMBL	tr\|V7BHJ9\|V7BHJ9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW16353.1}

Sequence

Transcript Sequence

>Glyur000658s00024842.1
CCTTTTACTTCACAGCGTTATCCATATCTATTCTATCCAAATATCCACTACACCATGGGAGAAGGAACCACTACTACAACGGAAGAGAAGAATGAACACACACTGCAACGTAATCCAATCACTACAATAATAACTCTAGCTTAATGTACTTCAGCTATGGAATCTACAAGGAGTATGTTTTGTTCATCTCCACCGTTTCCTCCAAGAACTCACCACTGGAACACTCTTCCTTCCTCTCCTTATACTTCTGTTTTGATGCTTCGTGAACAAGCTGCGCCTACAGTTGCCTCTTGGTCTACTAGTTTTTCAGCTCAGAATTTTCCTACCTCAGTTCTTTTACAAGAGCAGCGTGATGAGTATAGGTCTCTATTGCANATTTCTAAGGAAGACAAGACATGCCAGGCAATATTAAATACAAGGCAGATGGATATGGTCTCGGTTCATGAAGAGAACAACACTGTCAATGCTGATCAGGAAGTGCATGACTTTAGGCAGCATCTGCATCTCTGGCCTCGTTTACAGAACTTATTAACTTCCTCACAAACAGGAGAAATTGATGCTTCTTCAACTCTACAGTGTGTTACTCTTGACACAGAGAGGCCTGCAGATAGTTTGCAATGTAATGCAGTTTCTCTTGCTAGGAAAACTTTGTCTCCCTCAAAACAAGCAGCCTCAGTAGCTGAAGACTTGAAATCAATTAAAGCTGATGAGGATACTGATGATTCAATTCCTTTTGGTCTGGCATCTGTTGGTTTGGCTGATCCTTCACTTGGAAGCAATAAAACCGTGAGGTCAACGCGGCTAAAAGAGAGACGATCNAAACAAAGAAAAGTACCAAAGTCAAAAGTTAAAGATGATGAAACTTACCTTGCTAGAAAGGATGATGCACAGAAAAGGCTACATGTAGAAAAGAAGATAAATGAAGAATTTGGTCAAAAAGATCCCCTGCGCTTGTTCTTGTGGAGTCAAGAAACAAAACTTTTGACTCCTGAACAAGAGTCTCAGTTGATTGCTCGGATACAGGACCTATTTAAATTGGAAGAATTGAAGACCAGTCTTCAATCTCAATTTGGAAGGGAACCAACTGTGGATGAATGGGCTGAGAGTGCAGGACTTAACTGTCAAGCACTGCAGACNCAGCTTCGTTGTGGTAACAGAAGCAGAGAAAAGCTGGTTCAAGCAAATTTACGCTTGGTTCACCATGTTGCTAAAAATTACCAGGGNCTTGGTCTCAGTCTTGAGGACTTATTACAGGAGGGAAGTATGGGTCTTTTGAAGAGTGTTAAAAANTTCAAACCCCAAGCTGGTTGCCGATTTGGTAGTTATGCATACTGGTGGATAAGGCAAGCAATAAGGAAGGCCATATTTCATCATTCCAAGACAATACGTCTGCCGGAGAAGGTATATACCCAGTTTGGGAAGATATTGGAAGCAAAGAAATTGTACATTCAAGAGGGAAATCTTCACCCAANCAAAGAAGAATTAGCAAGAAGGGTAGGAGTTACAGTAGAGAAGATCGACAGTTTGCTATTTGCTGCAAGAATTCCAATTTCTATGCAGNAAACTGTGTGGGCTGAACAAAATACAACTTTCCAGGAGATCACTGCAGACACTGCAATTGAGAGCCCGGACACAAGTGTTTCCAAACAGCTTATGAGGCGGCATGTGCTCAACCTCCTAAGTACCTTACGCCCCAAAGAAAGAAGGATAATTCGGCTAAGATTTGGTTTTGAGGATGGAGAACAGAAATCTTTATCAGAAGTTGGAGAAATATTTGGTTTGTCTAGGGAAAGGGTCCGTCAGTTGGAGATCCGTGCATTCCACAAGCTCAAGAAGTGTCTTGTCAGTCAAGGACTTGATGCCTATGCAGACTTGCTTGTATAGAGGACAAAGGCCACGGCATTTCATTTTACATGGCTGAGAGTCAGGGACTTTTCTCTTGCCACTTTTTTTATGGTTAGTAACTAGATCTAGTTTTTGAAGGCAAGTTTAACACTACACCACTGCAACTGAGGATAGATCAAAGGGCCTAATGGCTGGCAGTTGGTAGAAGAACTTGGAGTATTAAAAAGGGTGAGGCTTATACTACAATGAGGGCATTTATAGGTGAAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00658	16037	21382	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0016987 sigma factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000658s00024842.1	PF04542.9	Sigma70_r2	339	404	6.80E-18
Glyur000658s00024842.1	PF04539.11	Sigma70_r3	421	494	9.20E-13
Glyur000658s00024842.1	PF04545.11	Sigma70_r4	507	560	1.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.782
SRR1783600	control	0.778
SRR1783602	moderate drought stress	0.582
SRR1811619	moderate drought stress	0.577

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.665
DRR006520	Root Summer glycyrrhizin high producing strain	0.661
DRR006521	Root Winter glycyrrhizin high producing strain	0.788
DRR006522	Root Winter glycyrrhizin high producing strain	0.771
DRR006523	Root Summer glycyrrhizin low producing strain	0.414
DRR006524	Root Summer glycyrrhizin low producing strain	0.415
DRR006525	Leaf Summer glycyrrhizin high producing strain	76.843
DRR006526	Leaf Summer glycyrrhizin high producing strain	76.670

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.270
SRR2868004	Drought Stress (root)	2.920
SRR2967015	Control (root)	3.311

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.328
SRR9715740	Leaf	98.375
SRR9715741	Leaf	40.183
SRR9715739	Root	0.067
SRR9715742	Root	0.131
SRR9715743	Root	0.111

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.509
SRR8749028	MeJA induced 9h	1.711
SRR8749029	MeJA induced 9h	1.360
SRR8749030	Uninduced	1.141
SRR8749031	Uninduced	0.693
SRR8749032	Uninduced	1.983

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.856
SRR8400027	Control - Root	2.481