Gene detail

Gene detail information of Glyur000657s00033590

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68660.1	4.00E-57	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
NR	AFK40356.1	1.49E-99	unknown [Lotus japonicus]
COG	YP_007156835.1	3.00E-26	ATP-dependent Clp protease adapter protein clpS [Anabaena cylindrica PCC 7122]
trEMBL	tr\|I3SJB4\|I3SJB4_LOTJA	6.00E-100	Uncharacterized protein {ECO:0000313\|EMBL:AFK40356.1}

Sequence

Transcript Sequence

>Glyur000657s00033590.1
ATTTATTTTCAAAGCTCACCCTAGGCCTAATCCATTTTTTTTTTCTTTTTTAACGTCCCCTAGGCCTAATCCTTGCCATTTAGTGATTTGGAAAGGAAATTGCACCACATGTTTTTTCTTCTGCATTTGTAAATTTTTTGTGCAGCCAGAAAAAGATCGTTCTAGGCATACACGTGTCATNGTATCAATCCACCGATTTTCAATCCTAATTTTTCATTTTTTCTTTTTGTTTTGTGCTCAATGCTCATTGTCATTCTCATTAACTCATACATATACGTCGGGGAGAGTGTACAAAACCCAGNAAGAAAAAAAATCAACACTTCACACAGAAACAAAGAACGAAGAGAGAAAGATGAATAGTGCGATTTGTGGGAGATTGGGCCTCTCTCCCAACCACGTCTTCAAATCAGGGGACAAATATTCTTTTTGTAAGGGACCATGCTCCAATCTATGTGTTCCCATGGCTGTATTAGCAACAGGACCTGGTAAAGGGGGAGGGCTGCTGGACAAGCCAGTTATTGAGAAAGTCAGCCCTGGTCGTGAATCTGAATTTGATTTGAAGAAATCACGGAAAACAGCGCCGCCATATCGCGTAATATTGCACAATGACAACTACAACAAACGGGAATATGTTGTCCAAGTACTGATGAAGGTCATCCCAGGAATGACCCTTGATAATGCAGTTAACATCATGCAAGAAGCGCACACGAATGGATTATCAGTGGTGATCATCTGTGCCCAAGCTGATGCTGAAGATCATTGNATGCAGCTAAGAGGCAATGGATTACTCAGTTCAATTGAACCTGCGAGTGGTGGTGGTTGTTGANGACATGTTTCTGTTTAAACCTTCTTCCCTGGCTTTGATTGACGCTATATTGATATTGAAGTGCGAGATTGGAAATATTAGGTGTACATAAGTTCCCTCCTCTTGAAATCCTAGAGAAATCCATAAAACAAAAAAGACATAACTTGTGTAGAACTTTATAATCTTATGNTGAAGGCAACGACATATGATTAAGACATGTGATAGTTGTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00657	109540	115959	-

Gene family

Gene family	subfamily
Ubiquitin Family	N-domain

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030163 protein catabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000657s00033590.1	PF02617.12	ClpS	74	146	1.50E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.219
SRR1783600	control	25.408
SRR1783602	moderate drought stress	23.890
SRR1811619	moderate drought stress	23.792

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.776
DRR006520	Root Summer glycyrrhizin high producing strain	37.436
DRR006521	Root Winter glycyrrhizin high producing strain	23.733
DRR006522	Root Winter glycyrrhizin high producing strain	22.994
DRR006523	Root Summer glycyrrhizin low producing strain	54.681
DRR006524	Root Summer glycyrrhizin low producing strain	54.757
DRR006525	Leaf Summer glycyrrhizin high producing strain	107.434
DRR006526	Leaf Summer glycyrrhizin high producing strain	107.354

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.010
SRR2868004	Drought Stress (root)	22.811
SRR2967015	Control (root)	20.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	84.870
SRR9715740	Leaf	153.171
SRR9715741	Leaf	100.816
SRR9715739	Root	1.624
SRR9715742	Root	8.987
SRR9715743	Root	8.867

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.421
SRR8749028	MeJA induced 9h	20.515
SRR8749029	MeJA induced 9h	33.625
SRR8749030	Uninduced	17.463
SRR8749031	Uninduced	16.664
SRR8749032	Uninduced	15.237

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.849
SRR8400027	Control - Root	25.322