Gene detail

Gene detail information of Glyur000656s00026156

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22570.1	2.00E-79	nicotinamidase 1
NR	AET03373.2	1.12E-149	isochorismatase hydrolase family protein [Medicago truncatula]
COG	YP_722137.1	8.00E-68	isochorismatase hydrolase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q8S8F9\|NIC1_ARATH	2.00E-112	Nicotinamidase 1 {ECO:0000305}
trEMBL	tr\|G7LIK7\|G7LIK7_MEDTR	4.00E-150	Isochorismatase hydrolase family protein {ECO:0000313\|EMBL:AET03373.2}

Sequence

Transcript Sequence

>Glyur000656s00026156.1
GGGGCCAGGGGTGACATATTCCATCAATCAGGTCAAAGGCAGTACCACGAGGAAATGAGGGGGTTACCTTACCAGATTTATTAAAATATTAAAATATTTAATTTCATGATTAGCACCTTATTGTAAATATAATTGCGTGATTGGGTGCCTCGCGGTCAATTCGAATCAATTTTAACCTCCAACACCAAGGGACGAAGGAAAAATGGGCTCTCACACTCCGACGCTTGAGCTGGTGAAGGAGGAAATCCCAGTGAAACGACAACCTCTGCTTTTGTCCGCAGACACCAAAACAGGCCTCGTCCTCGTCGACCTTGTCAATGGCTTCTGCACCGTTGGCGCTGGCAATCTCGCTCCGAAGGAACCCGATGAGAGAATTTCTAAGATGGTGGAAGAATCGGTGNGGCTTTCGAAAGTGTTTTCTGAGAAGAAGTGGCCTATTTTTGCTTTCCTTGATTGCCATCACCCGGACATTCCTGAGCCCCCTTATCCCCCACACTGTCTTATTGGATCAGACGAAGGAAAATTGGTTCCTGAGCTCTTGTGGCTGGAAAATGACCCAAATGCAACTCTCAGGCGGAAAGAATGCATTGATGGATTCCTTGGTTCATTTGAGAAAGATGGCTCTAATGTCTTCGTTGACTGGGTGAAGAATAATCAGATAAAACAAGTTTTGGTTTGTGGGATATGCACTGATATATGCGTGCTGGATTTTGTCTGTTCAGTTTTGTCCGCAAGAAATCGCGGTTTCCTTTCTCCTCTGGAAAATGTGATTGTGTCCTCCCTAGCTTGTACTACTTATGATGTTCCACTACATGTAGCCAAAACCAACGAAGATCTGGTATCCCATCCACAGGAGCTGATGCATCATGTTGGACTTTACATAGCATGGGGAAGGGGAGCTCAGATAGCATCAGAGGTGTTATTTGAATAATGGAGAGGTGTTATTATTGGAATAACTAGAACAGCGTAAGTGTTGGTATATAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00656	59585	62789	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000656s00026156.1	PF00857.15	Isochorismatase	30	208	1.10E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.538
SRR1783600	control	27.552
SRR1783602	moderate drought stress	33.028
SRR1811619	moderate drought stress	32.873

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.163
DRR006520	Root Summer glycyrrhizin high producing strain	23.844
DRR006521	Root Winter glycyrrhizin high producing strain	2.851
DRR006522	Root Winter glycyrrhizin high producing strain	2.752
DRR006523	Root Summer glycyrrhizin low producing strain	51.347
DRR006524	Root Summer glycyrrhizin low producing strain	50.909
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.879
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.852

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	155.231
SRR2868004	Drought Stress (root)	417.612
SRR2967015	Control (root)	204.421

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.833
SRR9715740	Leaf	45.273
SRR9715741	Leaf	45.075
SRR9715739	Root	61.203
SRR9715742	Root	87.701
SRR9715743	Root	81.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.503
SRR8749028	MeJA induced 9h	20.585
SRR8749029	MeJA induced 9h	18.051
SRR8749030	Uninduced	19.446
SRR8749031	Uninduced	13.080
SRR8749032	Uninduced	19.115

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	256.552
SRR8400027	Control - Root	431.148