Gene detail

Gene detail information of Glyur000656s00026151

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38050.1	0	Xanthine/uracil permease family protein
NR	XP_004509704.1	0	PREDICTED: nucleobase-ascorbate transporter 11-like [Cicer arietinum]
COG	YP_003736672.1	1.00E-71	xanthine/uracil permease family protein [Halalkalicoccus jeotgali B3]
Swissprot	tr\|Q6SZ87\|NAT11_ARATH	0	Nucleobase-ascorbate transporter 11
trEMBL	tr\|A0A072TRH3\|A0A072TRH3_MEDTR	0	Nucleobase-ascorbate transporter-like protein {ECO:0000313\|EMBL:KEH20119.1}

Sequence

Transcript Sequence

>Glyur000656s00026151.1
ATGGAAACTGGGTTGAGCTTAGAGAGGGGAAAGGTTATGAGGGGTGGCACTAGCAATGGCAAGAGACGTGAACGTGATCATAATAATGCTGCAGCAAAAATTGAGCCCTTTGTGCCAAGAAGTGATCACAATCCTAAAGAGTTGAGGACTTGGGCAAAGAGTACTGGGTTTGTGTCTGATTACTCTGGGGAAGCTGGGACTAGTACCACTGCAAGTGANAAGTTTGATAGTGTTGTTGGGTTTGTTGATGATCAGAGAGAAGGAGGGTCNTCTCCCAAGATAGAGATCGATCCGGTTCTCGGGGTGGCGAGGCCTAATAGGGACAANGAGATTGAAGAACCAGTTTCTGAGTCCAAGCATGGAGCCATAAGGAGTGAGAAAGACAGGATTTTGAGGTCAAAGGATGTGTGGAATGGGACAGTGGGGAATCAATATCAGAGGAGGAAAAATGGGGATGGACTTGCTTTGGCTTTAGAAGCTGCTAATGGTGGTGGTGGTGGTGGNGGTGTTGACAGGAAAGTTGGGTTAAGAGGGAATGATGGTGATGCTAATGGGATGGTGAATTTGAATAGGGATGGCAATGGCCATGGACTTGGAGTCTCTTCTGCAGTTGCTCCTCTGCCAGAGCAAAAGAAGGAAGAGGAAGGTGTAATAACTGAAGGAGATGATGTTAAGGTGAATCTGTATGCAGAAAGGGAGGAACCTACTGATAGAGGGTCCCAGGGACCATTATCTGGAATGAAGTATGGGCTCAGAGAAAANCCTGGTCTTGTACCTCTTATCTATTATGGCCTGCAGCATTACCTATCATTGGTTGGCTCGCTAGTATTAATCCCATTAGTCATGGTACCGGCCATGGGTGGAACAGATAAGGATACTGCTAATGTAATTTCTACAATGCTGTTTGTTTCTGGCATCACTACGATACTGCATTCCTACTTCGGTACCCGTCTGCCTTTAGTTCAAGGAAGCTCATTTGTGTACTTGGCACCAACATTAGTTATCATAAATGCTGAAGAATTTCGAAATCTTACAGAACACAAATTTAGGCACATAATGAGGGAACTCCAAGGAGCTATAATTGTTGGTTCGATATTCCAATGTATCCTGGGATTTAGTGGTTTAATGTCTCTTCTTCTGAGGATAATCAACCCAATTGTGGTGGCTCCAACTGTTGCTGCTGTAGGTTTAGCATTCTTCAGCTATGGCTTTCCACAAGCTGGCACTTGCATGGAAATTAGCATTCCACAAATAGCATTGGTTCTAATATTCACACTGCATCTTCGAGGAATATCTATCTTTGGACACCACTTGTTTCGAATTTATGCTGTTCCCTTGAGTGTCACAATAATTTGGATATATGCTTCATTTTTAACGGCTGGGGGAGCATATAACTACAAAGGATGCGACCCCAACATCCCTAGTTCAAACACTCTGATTGATGCATGCAAAAAGCATGCATATACCATGAAGCATTGCAGGACTGATGTATCCAATGCATTGTCAACTTCTGCATGGCTCAGAATTCCTTACCCTTTGCAATGGGGTTTACCTATTTTCCATTTTAGGACTTGCATAATCATGGTCATAGTGTCCCTGGTTGCCTCTGTGGATTCAGTTGGAACTTATCATAGTGCANCTCTGAGAATTAATTTGGGGCCTCCAACTCCAGGAGTTGTGAGNAGAGGAATTGCATTAGAGGGTTTCTGTAGTATATTGGCTGGTCTTTGGGGTTCAGGAACTGGGTCAACAACCTTGACAGAAAATGTTCACACAATTGACATCACAAAGGTAGCAAGTCGGAGGGTAGTGGAACTTGGAGCAGCTTTCATGATCCTCTTCTCATTTNTGGGAAAAGTGGGTGCTCTTCTGGCTTCCATTCCACAGGCCTTGGCTGCATCAGTACTGTGTTTCATGTGGGCTCTTGTTACTGCATTGGGCCTGTCAACCTTACAGTATGGTCAATCAGGCAGCTTTAGGAACATAACAATAGTTGGCGTTTCATTGTTCCTTGGTCTATCCATNCCTGCNTATTTTCANCANTACCAGCCTGAAACCACTCTGATACNACCCTCTTATCTGGTACCTTATGCGGCTGCTTCTAGTGGACCATTCCATTCTGGCATTAAACAGCTTGATTTTGCAATCAATGCCCTTATGTCCTTAAGCATGGTGGTCACACTATTGGTGGCATTCATACTGGACAACACTGTCCCAGGAAGTCGACAAGAACGTGGGGTGTATCTATGGTTGCGACCTCAAGACATTGCAAATGACCCCTCACTGGCATCTGCGTATTCTCTACCAAGGAAAGTTGCTAGGTGTTTCTGTTGGGCAAAATGTTTGGGAGTCTGAATCAACCCAAATCCTCTATTGCAGTCCTGCCGTTAAGTACGATCTTGGCCGTTGNATTAATCCAACGACTATCCAAGTTAATCTCTCATTGGTTGGATTAATTTTATGGCCAAAATNCTACCGCAGACAGCAGGACTGCTATATAGGATCCGATTGGTTCCTAAACACATTGTTATCTCTGAGTTCTTCTATCTGGGACCTAATGGTAACGTTCACTGCTAATTCCTCAATCAATTTTTCTTCTGCTTGGAGCCGTGGGGGAGCATAGAAGAGATATAGCAGCTTATGAAGAATAAAAAAATATGTAAATGGATTTAATTACAGACACAGTACAGTACAGCAAATAGGAAATAGTTTAGCACTAATTCTGCTTGTGAATTAAATTACAAAGCTGTTTTCACATAGGTCAATTTAGAAATTATTGTACTTACACAGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00656	32526	39326	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000656s00026151.1	PF00860.15	Xan_ur_permease	260	679	1.50E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.475
SRR1783600	control	3.657
SRR1783602	moderate drought stress	3.934
SRR1811619	moderate drought stress	3.921

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.497
DRR006520	Root Summer glycyrrhizin high producing strain	4.724
DRR006521	Root Winter glycyrrhizin high producing strain	0.262
DRR006522	Root Winter glycyrrhizin high producing strain	0.227
DRR006523	Root Summer glycyrrhizin low producing strain	4.786
DRR006524	Root Summer glycyrrhizin low producing strain	5.218
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.394
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.317

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.581
SRR2868004	Drought Stress (root)	3.110
SRR2967015	Control (root)	2.298

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.960
SRR9715740	Leaf	1.770
SRR9715741	Leaf	0.735
SRR9715739	Root	0.838
SRR9715742	Root	5.759
SRR9715743	Root	4.824

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.053
SRR8749028	MeJA induced 9h	0.134
SRR8749029	MeJA induced 9h	0.065
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.491
SRR8400027	Control - Root	3.555