Gene detail

Gene detail information of Glyur000656s00026150.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65500.1	2.00E-133	U-box domain-containing protein kinase family protein
NR	XP_006603389.1	0	PREDICTED: putative U-box domain-containing protein 50-like [Glycine max]
Swissprot	tr\|Q9FGD7\|PUB50_ARATH	2.00E-176	Putative U-box domain-containing protein 50
trEMBL	tr\|A0A072TRS2\|A0A072TRS2_MEDTR	0	U-box kinase family protein {ECO:0000313\|EMBL:KEH20117.1}

Sequence

Transcript Sequence

>Glyur000656s00026150.1
ATGGATGCAACCCAAACAGAAAAAATCTACGTTGCAGTTGGGTATGATGTGCTAGATGGATTTCAAACTTTGGATTGGGCTCTCAAGAANTGGATTTCTCATCCAATTTCTATAGTCATCTTACATGTCAAATACAACACTTCCAAGGATTATGTCTATACACTCCTTGGAAAACTCCCTGCAAAAGGCGCGTGTGAAGGGAAACTGGAACGTATCAAGAAATATGAGCAAAATATAATCAACAAGCTGCTTTCCAAGAAATCAAAAGATGCCATTAACGGGTTGGTCTATGTTCATCAACACAAGCCTGCCTTCTGTGAATTGTTCATTATCTATGGAGGNAAACAGGTCGCACCGCGAGTGAAGAACGATGAGATACTCATGGAGGACGATAATGGGGTAAAGGTTGCCAAAGTGAGGGAGAAGATCAATCTTAAAGATAGGCTAGAGAGAATGTTCTCTGATAAAGCCATTGAATATTCCAGACATAGAAGTTCTAGTGCATCATCAACTTCCCCAACAAATTTGGAGGCCCATCTTGACCAAAATCAGTGGGAATTTTGTCTCCAAGAAATTGACACTTATTTACAAGAGTTATTGTCTTTGAATTTGGAGGAAGGAAGCTGTGGACAAGACATTAACGATGTCTCCCACATTAGTCCAATTGAACCATATGTGGAAGAACTTAAAAATTCTGATGATAAGAGTGCTGCAGAGAAACTTGAGATCCTCAAAGATAAACTGAATGAAGCTTATAAGACCATCCAAACGAAGAGAAAAGAAGAAAAGGTCAATTTGGAGAGGCATGCAAAAGCTGAATGGGCTATTTATGTATGCAATCAACGGGAAGAAGAACTTGAGTATCTAAAAAGTGAAGAAGTGACAAGAAGGAAAGAAGTAAAGAAGGAACTGAATGCAGAAAAAGAACAACTTGAAAAAATNAGAAATGATGTTGAAGAGAGCAAGCAAAGGGTTAGTTCACTAGCTAAGCTGCAACTAGAGCTCCAAAACAGGCTTCATATTTCAACAATGGCAGTGTCAGAATGTGAAAACCAACTAGAGAAAGTAATGGNTGCAAGGACAGAGATGCTTATGGAGATAGAGGAGCTAAGGAGACAAAGGGATGTGTTGAACAGAAGGATTGAGTTTTTCAAAGAAAAAGATGCTACTGAAATGGGTGCTAAGCTGATAGAGAAGGGTTGTANTTTAAGGGAGTACACAAAGGAAGACATCACCTTGGCCACACACAATTTTTCAGAGGATTTGAGGTTGAAATCTGGTGGGGATTGGAGTAATGTGTATAGAGGACACATTAACCATTCCACTGCTGCAATCAAGATGCTTAATTCTGTTCATGGCTTGTCCCAACAAGATTTCCAAGCTAAGTTGATGTCTCTCGGGAGTATTCGACATCCCCATNTGGTTGCTGTGTTGGGCTTCTGCTCTGAGCCCAAATGCTTAGTTTTGGAATACATGCACAACGGCAACCTGGAAGAAATACTATTTTGTAAAACAAGAAGNCGGGCTTTAGGATGGCATGACCGTATAAGGATAGCCATAGAAGTTTGTTCTGGGATGGGCTTTCTCAATGCATTTCAGCCCAGGCCCATTATCCATTGCCATCCTTCTNCATCCAACATCCTCCTAGACTGCAATCTTGTTGCAAAGATCACAGGGTTTGGGCTTCATGGGTGCAATGAATTAGAATGTGATGTTGAGTCAGATATGAAGGCAATAGGGGTTTTGTTGTTGCATCTANTGACTGGAAGAAGAAGGAATTGGGTGACAATTGATGTGGAGGCCTTTTATGATGAGATTGGNGAACAATGGCCATTGGATGTAGCAAGAGGACTTGTGGGCTTAGCAATGAGGTGCATGTCCATGAATTGTGAGACCAATGTAGAAGTGAGCATAACTAGAGTCATGGAGGAACTCAATGAGATAAGAAGAAAGGGTAGTGACATGGTTGATGGGGAAGGGTGGAGGGCTATGATTGGTGGGGATCTANATGGACAAGACTCTAGTAATGTGCCTAAAGCAATAGAAGANTGGTCGCAATCGGGAAATGACACATCACCCAAAAACTTGAAGCTAAACAACAGATTATTACTTACCCCTAATCATACCCTCCGTTCCCTAATTGAGGACTGGCAAAGCAAGAGATCGATTAAAGTTGCAAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00656	27643	32377	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.4.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000656s00026150.1	PF07714.12	Pkinase_Tyr	428	563	2.40E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.033
SRR1783600	control	0.034
SRR1783602	moderate drought stress	0.027
SRR1811619	moderate drought stress	0.042

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.042
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.021

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.028
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.008
SRR8400027	Control - Root	0.024