Gene detail

Gene detail information of Glyur000655s00035528

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50150.1	6.00E-22	Plant protein of unknown function (DUF247)
NR	KHN13314.1	9.94E-124	UPF0481 protein [Glycine soja]
Swissprot	tr\|Q9SD53\|Y3720_ARATH	2.00E-16	UPF0481 protein At3g47200
trEMBL	tr\|K7K384\|K7K384_SOYBN	4.00E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G28800.2}

Sequence

Transcript Sequence

>Glyur000655s00035528.1
ATGTTGGGTTCCGTAAACGACCAGCGTGTTAAAGCAAGCAGCATTTCTGATGTTCCAGAACAACTTCGNAAAACGAGAAAGGAAGCTTACATGCCAAAGGTGGTCTCAATTGGACCCCTACACAGGCAAACCAGAAGGGAACTACTATACATGGAAGAGATCAAATGGCGCTGCATGAGGTTTCTTCTTTTTCGAACCCCAAAACCATTAGAAAGCTTCGAGAAATGCAGCAAAGTCATTTATGACTTAGATGAGGTGGTTCGTGCAGCTTACGCGGATCACATCAAACTCAACGNCTANGATCTTGCCAAAATCATGNTGCTCGATGGTTGTTTCCTNTTAGAGCTTCTAATCAGTAACGACGAAAATCTACATAGAAAATTGAGAAATNTTTCAAATGAAGGAAAGGAAAGCCCCGGAGCTGAAGTTGGAAAAATGGAACTCGTACTGTCTGATTTGAAACTGCTTGAAAACCAAATACCTGTCTTCATTCTCACCGTGTTGTTTCAAACTCTCTTCGTCGCTGAGGCGCAGAGTTNTGAAGGGTTTCGAAAGATTGTGAATGATAGTGCGCTTTCTCTCTTGGGTGGTACTTGCTCTTCTAATTCGGTCATTTCTGTATATGATAGCCCAAACTGCGCACACTTTCTTGAACTCGTGCACTGGTTCATGACAAGGGAAGTGGAAAACAATCATCACGTTTCAATAACTGTGGATGGAAATGGGAGTACTGAACCGAAACAAACACTAGAACTAAAACACTGTGCTACAAGGCTCGAAGCTGTTGGTGTTACAATTGCTCCTCTGGATTCTGACCCCGAAAAGGAAGGAAGCAATAGCATGTCAATAAGGCTTGAAAATAGGAAAGAGGCCATCACTTTTGGCTGTGACAATAAGTTTAGCAAAATTAGCAAGGGGAGTAATAAGAAGCTAGAAATCCATCCACTNCATATTACAGAGACTACGGAAGTTCAGTGGCGAAATCTCATTGCTTGGGAGCAAAACAGAACTGCCCATGAGAAATTCCTCAAGGTAGAAAATCGAACTCGCTGCAAATTTACTCAGTATGCTTTGTTGTTCAGAGACTTGATTTGTTGTGAACACGACATTCAACTGCTTAAAGAGCGAAAAGTGCTGCTGGTAGACGAGGGGAAGAGAAGCAACGAGGATGTGATGAATATCTTTCGAAAAATCGCCAGTGGAATTGAAATTGATGCTAGTAGTGGTGATGGCAGGTTCGGCCAACTAATTAACGACTTGAACACAAGCTCAGGTGCCAGAGGGAATTGTAGAATCCTCTGGCATCGTTGCAGATGCATTGCAACAAGCATGAGGTACACGTTCAGAGACATGTTTGAGATTTTAAAACGCGATCACACTCCCACTGTGTGGAAAACGTTGGGAGTGATTGCTGCCATCGTGCTGCTTGGTCTCACCATCGCCCAGACTACTTTTGCAGCCATCAGTTTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00655	104301	105773	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000655s00035528.1	PF03140.10	DUF247	15	479	7.70E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.149
SRR1783600	control	0.124
SRR1783602	moderate drought stress	0.103
SRR1811619	moderate drought stress	0.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.367
DRR006520	Root Summer glycyrrhizin high producing strain	0.365
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.415
SRR2868004	Drought Stress (root)	10.490
SRR2967015	Control (root)	15.905

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.339
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.215
SRR9715739	Root	0.006
SRR9715742	Root	0.556
SRR9715743	Root	0.496

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.008
SRR8749028	MeJA induced 9h	2.475
SRR8749029	MeJA induced 9h	1.295
SRR8749030	Uninduced	2.777
SRR8749031	Uninduced	8.739
SRR8749032	Uninduced	2.060

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.381
SRR8400027	Control - Root	1.314