Gene detail

Gene detail information of Glyur000654s00029198.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67410.1	6.00E-149	Exostosin family protein
NR	XP_004504444.1	0	PREDICTED: probable glycosyltransferase At3g07620-like [Cicer arietinum]
Swissprot	tr\|Q6DBG8\|ARAD1_ARATH	9.00E-79	Probable arabinosyltransferase ARAD1
trEMBL	tr\|A0A072TT39\|A0A072TT39_MEDTR	0	Exostosin-like protein {ECO:0000313\|EMBL:KEH20592.1}

Sequence

Transcript Sequence

>Glyur000654s00029198.1
GAAGAAATGCATCTCGGTGCATCACTGTCACTGCACATCATCCACATCTGCCTCGGTTGCGTTTCCAACAGATAAACATGGGGAATGCTACTGGGCAGTGAGAAAAAGAATGAAAATGGTCACCGCAACTGATTGCAGCAGACCGAAGAAAGCAACACCTAACAGAAACAGAAACAGCAGCAGTATCAGAAAACTCCCGAAATTTATTTGAAAAAAAAAGGAAGAAGAAGAATAAGGAAGAACCATGTATGGAAAAGTGGCCCTCTCATTCGTTTTCGTTTCCCTGCTCCTAATTTCCTACTCAATCTTCATCGGCACCCTCGACATTCGATCCTACTTCTTCCCCCTGTCAAATTCACCCACTGTTGCACCCGNCCCGTGCTCGCCCGACCCGCCACTCCGGGTCTACATGTACGATCTCCCTCGCCGNTTCAACGTCGGCATGATTAGTCGCCGGAGCTCGTCGGAATCCCCCGTAACCGCCCGGGAATGGCCGCCGTGGCCGGGGAACTGGGGCCTCAAGAAGCAGCACAGCGTGGAGTACTGGATGATGGGCTCGCTTATTTATGAAGGCGACGACGGTGAGCCCAGAGAAGCTNTTAGGGTTTCCGATCCGGAACTCGCTGACGCGTTCTTTGTGCCGTTCTTCTCTTCGCTGAGCTTCAACACGCACGGACACACTATGAAGGATCCCGCCACACAGATTGATCGCCAGTTGCAGGTTGATTTAATGGAATTCTTAAAGAAATCCAAATACTGGCAAAGGTCTAAAGGAAGAGACCACATATTTCCTATGACACACCCCAATGCCTTTAGGTTCCTACGAAATCAAGTGAATGAATCTATTCAGGTTGTTGTGGATTTTGGCCGCTACCCCAAGGACATGTCTAATTTGAACAAAGATGTGGTGTCCCCGTATGTGCATGTTGTGGATTCTTTAACAGATGATGAGCCCCAAGATCCTGTTGCTACAGAAGAAAACATAAAAGCGTCATCTAAAGGGATGCGTTCATCAAAGTTCTGTTTGCATCCAGCAGGAGACACACCATCGTCTTGTCGTCTTTTTGATGCCATTGTGAGTCACTGTGTTCCCGTCATTGTGAGTGATCAAATTGAACTCCCATTTGAGGATGAGATTGATTACTCCAAGTTCTCATTGTTCTTCTCTTTCAAAGAGGCATTACAGCCTGGCTACATGATCGACCAGCTTCGAAAATATCCAAAGGAGAAATGGACTGAAATGTGGAGGCAAGTTAAAAACATCTCCCATCATTATGAATTCCAGTACCCTCCGAAAAGAGAGGATGCTGTTAATATGCTGTGGAGACAGGTCAAGCACAAACTTCCAGGGGTCAGACTCTCTGTTCATAGAAGCCGAAGGTTAAAAATCCCAGATTGGTGGCATAAGAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00654	128406	132151	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000654s00029198.1	PF03016.10	Exostosin	50	238	5.90E-39
Glyur000654s00029198.1	PF03016.10	Exostosin	248	312	1.50E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.481
SRR1783600	control	15.411
SRR1783602	moderate drought stress	11.976
SRR1811619	moderate drought stress	12.068

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.068
DRR006520	Root Summer glycyrrhizin high producing strain	12.260
DRR006521	Root Winter glycyrrhizin high producing strain	12.526
DRR006522	Root Winter glycyrrhizin high producing strain	12.110
DRR006523	Root Summer glycyrrhizin low producing strain	9.605
DRR006524	Root Summer glycyrrhizin low producing strain	9.389
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.427
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.339

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.531
SRR2868004	Drought Stress (root)	17.511
SRR2967015	Control (root)	19.489

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.985
SRR9715740	Leaf	8.737
SRR9715741	Leaf	8.844
SRR9715739	Root	8.511
SRR9715742	Root	14.672
SRR9715743	Root	12.203

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.627
SRR8749028	MeJA induced 9h	14.351
SRR8749029	MeJA induced 9h	6.778
SRR8749030	Uninduced	2.486
SRR8749031	Uninduced	3.098
SRR8749032	Uninduced	2.604

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.460
SRR8400027	Control - Root	18.415