Gene detail

Gene detail information of Glyur000654s00029194

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67340.1	2.00E-135	HCP-like superfamily protein with MYND-type zinc finger
NR	XP_003531195.1	0	PREDICTED: F-box protein At1g67340-like [Glycine max]
Swissprot	tr\|Q9FYF9\|FB76_ARATH	9.00E-171	F-box protein At1g67340
trEMBL	tr\|I1KS21\|I1KS21_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G10980.1}

Sequence

Transcript Sequence

>Glyur000654s00029194.1
TCTCTCAAGGGAGAGAGATAGAGAGAAATACAAAGATAGAGGGAGTAGGGATATGAGAACAAGGAGAGGGGCGTGTTATCCAGAACGTGGTGCTGGTGGAGTAGTTACAAGGATGTGTTCCGTTGCGAAGAGAAAGAAGGATATGCATATGCATATACATACGCATATGCACAGAGAGTCTATTTTTAACCGGAAGAGGCAAAAGAAATCTCCGGACAAAACCGGCAGGGAATACGATTTTTTCGAGTCTTTACCGGATGACCTCGTAATCTCTATCTTCTGCAAGCTTAGCTCCACCGCCACTTCCCCGTCCGATTTTGTCAGCGTTTTGATAACGTGTAAGAGATTAAACCGATTAGCACTTCATTCTCTTGTATTATCCAAAGCTTCCCCTAGAATTTTCTCTATTAGAGCCAAAAACTGGTGCGATTCGGCACATAGCTTTCTCAAACACTGTGCCGATGCGGGAAACGTTGAAGCCAGCTATACTTTGGGCATGATCCGCTTCTACTGTTTGCAAAACAGAGGAAGCGGGGCTTCGTTGATGGCGAAGGCTGCCATAAGCTCTCACGCGCGTGCTCTCTACTCGCTAGCAGTTATACAGTTCAACGGCAGCGGCGGCACCAAAAGCGACAAGGACCTACGCGCCGGCGTGGCTCTCTGCGCCAGAGCAGCTTTCCTCGGCCACATCGACGCTTTGCGCGAGCTCGGCCACTGTTTGCAAGACGGTTACGGTGTCCGACAGAACATCGCCGAGGGACGGCGATTCCTCATCCAGGCCAACGCACGCGAACTCGCCGCCGTGTTGTCCTCCGGTGCCGCCGCAAGAAACTGGATGACGTGGAACCTCAACCCGCAGCTCCGGCAAGTCGTGGCGTCCGGGTGTCCGCTGCTAAGCGATTTCGGGTGCAACGTGCCGGCGCCGGAGCCACACCCGGCGAGCCGGTTCATGGCGGAGTGGTTCGCGGCTCGGGGCGGTTCGCCCGGTCCGGGTCTCCGTCTTTGTTCGCATGCGGGTTGTGGCAGGCCAGAGACGCGGAAGCACGAGTTTCGAAGATGTTCGGTGTGTGGCGCGGTGAACTATTGCTCACGCGCGTGTCAGGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAATGCGCCCCTGTTGAGCAGTGGCTTGATGAGGAGGGCGAGGACGCCGTTGAAGATGACGGCGACGATGAGTTGATGGTTATGGAGGATAGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00654	76273	77763	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000654s00029194.1	PF08238.7	Sel1	174	212	0.75
Glyur000654s00029194.1	PF08238.7	Sel1	214	243	0.39
Glyur000654s00029194.1	PF01753.13	zf-MYND	321	362	1.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.674
SRR1783600	control	8.802
SRR1783602	moderate drought stress	13.738
SRR1811619	moderate drought stress	13.943

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.803
DRR006520	Root Summer glycyrrhizin high producing strain	9.258
DRR006521	Root Winter glycyrrhizin high producing strain	23.947
DRR006522	Root Winter glycyrrhizin high producing strain	22.331
DRR006523	Root Summer glycyrrhizin low producing strain	13.001
DRR006524	Root Summer glycyrrhizin low producing strain	12.767
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.530
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.533

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.748
SRR2868004	Drought Stress (root)	17.488
SRR2967015	Control (root)	16.546

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.667
SRR9715740	Leaf	29.413
SRR9715741	Leaf	25.020
SRR9715739	Root	23.974
SRR9715742	Root	18.443
SRR9715743	Root	19.581

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.107
SRR8749028	MeJA induced 9h	2.706
SRR8749029	MeJA induced 9h	4.475
SRR8749030	Uninduced	7.306
SRR8749031	Uninduced	7.929
SRR8749032	Uninduced	17.384

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.520
SRR8400027	Control - Root	15.785